FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483597

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483597
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6109073
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG186470.3052345257619282No Hit
GGGGGT126130.20646340287634474No Hit
GTGGGG124570.20390982396183513No Hit
GGGTGG114270.18704965548782934No Hit
GGGGTG106920.17501837021754366No Hit
TGGGGG103700.1697475214324661No Hit
GGTGGG98860.16182487915924396No Hit
GCGGGG97020.15881296556777108No Hit
GGCGGG93740.15344390220905854No Hit
GGGGCG92680.15170877807484048No Hit
CGGGGG92080.15072663233849062No Hit
GGAGGG89940.14722364587884282No Hit
AGGGGG86860.14218196443224693No Hit
GGGCGG85450.13987392195182477No Hit
GTGTGG81360.13317896184903993No Hit
GGGAGG80320.13147657590603354No Hit
GGGGAG79660.1303962155960487No Hit
GGGGTT79190.12962686810257465No Hit
GGGTTG78640.12872656784425396No Hit
GGGTGT78400.128333709549714No Hit
GTGGGT76960.12597655978247435No Hit
TGGTGG76360.1249944140461245No Hit
GTGGTG75360.12335750448554143No Hit
TTGGGG75040.12283369342615483No Hit
GTTGGG73460.12024737632043356No Hit
TGGGGT73040.11955987430498866No Hit
GGTTGG72960.11942892154014201No Hit
GGTGGT71410.11689171172123825No Hit
GGGGGA69660.11402711999021783No Hit
GAGGGG68720.11248842500326972No Hit
TGGGTG68640.11235747223842307No Hit
TGTGGG68120.11150627926691987No Hit
CGGTGG67970.11126074283283241No Hit
GGGGGC67020.10970567875027849No Hit
GTCGGG66300.10852710386665865No Hit
GGTGTG64940.10630090686426566No Hit
GTGGTT64670.10585894128290824No Hit
GTGGCG64360.10535149931912746No Hit
GGCTGG64140.1049913792157992No Hit
GTTGGT62360.10207768019796129No Hit
TGAGGG61720.10103005807918812No Hit
GTAGGG61270.10029344877692573No Hit
AGGTGG61110.10003154324723243No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)