FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483599

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483599
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4140913
Sequences flagged as poor quality0
Sequence length6
%GC57

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG223180.5389632672794623No Hit
GCAATT126830.3062851115200923No Hit
GGGGGT117680.284188535233655No Hit
GGGTGG109850.2652796617557529No Hit
GTGGGG109110.2634926162418771No Hit
TGGGGG106700.2576726436899302No Hit
GGGGTG104180.25158702923727205No Hit
CGGGGG100950.2437868170618412No Hit
GGTGGG98660.2382566356743066No Hit
GGGGCG91960.22207662899462027No Hit
AGGGGG87950.2123927742505095No Hit
GGGGGA87060.21024348978111834No Hit
GGGCGG85110.20553438335941857No Hit
GGGGAG82760.19985930638967783No Hit
GGCGGG82340.19884503731423478No Hit
GCGGGG81270.19626106609822522No Hit
GAGGGG79070.19094822808399983No Hit
GGGGGC78610.1898373619537527No Hit
GGAGGG78070.1885333017138974No Hit
GGGAGG73300.17701410292850878No Hit
TTGGGG68260.16484287402319248No Hit
GTGTGG66350.1602303646562968No Hit
GGGTGT64450.15564200455310218No Hit
TGGTGG63860.15421719799474173No Hit
GGGTTG62920.15194716720684542No Hit
GTGGGT62180.15016012169296963No Hit
GGGGTT61610.14878361366201126No Hit
TGGGGT59470.14361567122999203No Hit
GTGGTG56760.13707122076701442No Hit
GTGGCG56430.13627429506488062No Hit
GGTGGT54160.13079241220474808No Hit
GTTGGG53520.12924685932788255No Hit
TGTGGG53320.12876387405386203No Hit
AGGTGG52700.12726661970439854No Hit
CGGGGT52250.1261799028378524No Hit
GGTTGG51640.12470679775208994No Hit
CGGTGG51420.1241755139506674No Hit
GTCGGG51080.12335443898483257No Hit
GGGGCT50980.12311294634782233No Hit
CTGGGG50980.12311294634782233No Hit
TGGGTG50160.12113270672433833No Hit
GGCGGT50130.12106025893323526No Hit
AGGGGT49950.12062557218661682No Hit
GGGCGT48600.11736542158697852No Hit
GAGGGT48130.11623040619303038No Hit
GGGTCG48020.1159647642923191No Hit
GGTGTG47820.11548177901829862No Hit
ATGGGG47650.1150712415353812No Hit
TGAGGG47610.1149746444805771No Hit
GGGGTA47180.11393622614143306No Hit
GGCTGG46040.11118321007951629No Hit
GGGAGT45900.11084512038770193No Hit
TGGGCG45800.11060362775069169No Hit
GGGTAG45700.11036213511368144No Hit
TGCGGG45170.10908222413752715No Hit
TAGGGG45080.10886488076421795No Hit
TGGCGG44950.10855094033610463No Hit
ACGGGG44830.10826114917169233No Hit
GTGGAG44800.10818870138058925No Hit
GTAGGG44750.10806795506208414No Hit
TCGGGG44740.1080438057983831No Hit
TGGAGG44730.10801965653468208No Hit
GGGGAT44440.10731932788735238No Hit
TGGGAG44130.10657070071262062No Hit
GCGTGG43960.10616016322970322No Hit
CGGGTG43480.10500099857205403No Hit
GGGGTC43310.10459046108913662No Hit
GGTAGG43140.10417992360621921No Hit
GGGTGC42950.10372108759589974No Hit
GGATGG42870.10352789348629156No Hit
GCGGGT42740.10321395305817824No Hit
TGGGGC42550.10275511704785877No Hit
AGGGTG42350.10227213177383827No Hit
AGTGGG42030.1014993553354055No Hit
GGAGGT41590.10043678773256043No Hit
CGTGGG41550.10034019067775633No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)