FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483601

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483601
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6401757
Sequences flagged as poor quality0
Sequence length6
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG257030.4014991509362196No Hit
GGGGGT163730.2557579114608693No Hit
GTGGGG159860.2497126960614094No Hit
TGGGGG158100.24696345081514343No Hit
GGTGGG146520.22887466675164336No Hit
GGGTGG146100.22821859686332985No Hit
GGGGTG130960.2045688394607918No Hit
CGGGGG125930.1967116215126566No Hit
GGCGGG111840.1747020388309022No Hit
AGGGGG110560.17270258774270877No Hit
GGAGGG104950.16393936852023594No Hit
GGGGGC104030.1625022630505969No Hit
TTGGGG103860.1622367109529462No Hit
GTGGGT99480.15539483926053427No Hit
GGGGTT99420.1553011149907752No Hit
GGGGCG98410.15372342311649756No Hit
GCGGGG97800.15277055970728037No Hit
GAGGGG95140.14861545041462837No Hit
TGGGGT94990.14838113974023068No Hit
GGTTGG94840.148146829065833No Hit
GTGTGG94540.14767820771703769No Hit
GGGCGG94340.14736579348450746No Hit
GGTGGT94280.1472720692147484No Hit
GGGGAG93410.14591306730324188No Hit
GTTGGG93390.14588182587998888No Hit
TGGTGG92400.14433537542896427No Hit
GGGTGT91760.14333564988486755No Hit
GGGGGA90330.14110188812227642No Hit
GGGTTG89960.14052392179209552No Hit
TGTGGG89240.1393992305549867No Hit
CGGGGT84690.13229180676492408No Hit
TGGGTG82770.1292926301326339No Hit
GTGGTG82150.1283241460117902No Hit
GGGAGG80320.12546555578413862No Hit
ATGGGG78990.12338800113781265No Hit
GGGGTA77630.1212635843566071No Hit
GGGTTT76910.1201388931194983No Hit
GTCGGG74380.11618685307799093No Hit
TCGGGG74050.11567136959431606No Hit
GGGGCT72930.11392184989214679No Hit
AGGGGT72590.11339074569684542No Hit
GGTGTG72000.11246912371088126No Hit
GTAGGG71240.1112819496272664No Hit
CTGGGG70940.11081332827847104No Hit
TTGTGG70890.11073522472033849No Hit
GGCGGT70870.11070398329708549No Hit
CGGTGG70780.11056339689244686No Hit
GGGTCG70440.11003229269714548No Hit
GTTTGG69650.10879825647865109No Hit
TAGGGG69400.10840773868798831No Hit
GTGGCG69390.10839211797636181No Hit
TGGGCG68630.10720494389274696No Hit
GGGTAG68530.10704873677648183No Hit
GGGGAT67710.10576783842310791No Hit
TGGGGC67520.10547104490220419No Hit
AGGTGG67300.10512738924642094No Hit
GCGGGT66810.1043619743767219No Hit
TTGGGT66370.10367466306515541No Hit
TGCGGG66010.10311231744660099No Hit
GTGTGT65860.10287800677220332No Hit
GTTGGT65790.10276866179081774No Hit
GTGGTT65670.10258121325129961No Hit
TTTGGG65070.10164397055370893No Hit
GGGCGT64340.10050365860497361No Hit
TGGGTT64270.10039431362358801No Hit
GAGGGT64110.10014438223756383No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)