FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483605

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483605
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4885635
Sequences flagged as poor quality0
Sequence length6
%GC60

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG338590.6930317144035525No Hit
GGGGGT164440.3365785614357192No Hit
GGGCGG154700.3166425653983566No Hit
GGCGGG148480.30391136464349056No Hit
GTGGGG141740.29011581913098294No Hit
GGGGCG136340.27906300818624397No Hit
GGGTGG136320.2790220718494116No Hit
CGGGGG133990.2742529886084409No Hit
AGGGGG128510.26303643231637236No Hit
GGGGGC127710.2613989788430777No Hit
GGGGTG127090.26012995240127434No Hit
GCGGGG126390.25869718061214153No Hit
GGTGGG124760.25536086916030365No Hit
TGGGGG120350.2463344068887668No Hit
GGGGGA117130.2397436566587557No Hit
GGAGGG110890.2269715195670573No Hit
GGGGAG106760.21851816601117358No Hit
GAGGGG105650.21624619931697722No Hit
GGGAGG104860.21462921401209875No Hit
GGCCGG82370.16859630324410235No Hit
CGCGGG76030.15561948446824211No Hit
GGCGGT75050.15361360396345614No Hit
GGGCCG74280.15203755499541No Hit
GTAGGG73400.15023635617478587No Hit
GGGGCT71970.14730940809127166No Hit
GTGTGG71680.14671583120720236No Hit
GGGCGT69570.14239704767138767No Hit
CCGGGG69320.14188534346098305No Hit
GCCGGG67550.1382624776513186No Hit
GTGGGT67360.13787358245141113No Hit
AGGGGT67240.13762796443041692No Hit
GGCTGG67130.13740281457783893No Hit
CGGGGT66450.13601097912553844No Hit
GGGGTT65830.13474195268373507No Hit
GGGTGT65590.13425071664174668No Hit
TTGGGG65230.13351386257876408No Hit
GGCAGG64290.13158985474764284No Hit
GGTGGT64010.1310167460319897No Hit
CGGCGG63970.13093487335832496No Hit
GGGTTG63940.1308734688530764No Hit
GTGGTG63810.13060738266366603No Hit
GGGGAT63610.1301980192953424No Hit
GTCGGG63540.1300547421164291No Hit
GGGGCA63400.12976818775860252No Hit
GGGTCG62680.12829447963263732No Hit
AGCGGG62520.12796698893797837No Hit
CGGTGG62240.12739388022232526No Hit
GGCGCG62160.12723013487499577No Hit
GTGCGG62150.1272096667065796No Hit
AGGTGG62080.1270663895276663No Hit
GGGTAG61790.126472812643597No Hit
GGTTGG61390.12565408590694965No Hit
GTGGGC61020.12489676367555087No Hit
GGGGTA60860.12456927298089193No Hit
GGGGCC60800.12444646397039485No Hit
GTGGCG60760.1243645912967301No Hit
GGCGGC60590.12401663243365499No Hit
GGGATG60280.1233821192127533No Hit
AAGGGG59650.12209262460253374No Hit
CTGGGG59590.12196981559203667No Hit
GGGCAG59430.12164232489737772No Hit
TGCGGG59320.1214171750447997No Hit
ATGGGG58980.12072125731864947No Hit
CAGGGG58610.11996393508725067No Hit
GGAGGT58390.11951363538209465No Hit
GGGGAA58090.11889959032960916No Hit
TGGGGT58090.11889959032960916No Hit
CGGGCG58070.11885865399277679No Hit
GGAGGC57860.11842882245603693No Hit
GTTGGG57800.11830601344553983No Hit
GCGGGC57500.11769196839305433No Hit
TCGGGG57430.11754869121414105No Hit
TGGCGG57210.117098391508985No Hit
GGGGTC56670.1159931104145111No Hit
CGGGGC56120.11486736115162102No Hit
GGGCGC56100.11482642481478865No Hit
ACGGGG55410.11341412119407202No Hit
ATCTCG55270.11312756683624545No Hit
GCAGGG54990.11255445812059231No Hit
GGAAGG54600.11175619955236117No Hit
TGGGCG54480.11151058153136696No Hit
GAGGGT54380.11130589984720513No Hit
GCGGGT54140.11081466380521672No Hit
GACGGG53800.11011874607906649No Hit
GGGTGC53570.10964797820549428No Hit
CGTGGG53020.10852222894260417No Hit
AGGCGG52900.10827661092160999No Hit
GTGGGA52720.10790818389011868No Hit
GGCGGA52700.10786724755328632No Hit
GGGCTG52510.10747835235337883No Hit
TGGTGG52420.10729413883763317No Hit
GGTCGG52020.10647541210098584No Hit
GGACGG51980.1063935394273211No Hit
GCGTGG51510.10543153551176049No Hit
GATGGG51450.10530872650126338No Hit
GGTAGG51260.10491983130135592No Hit
GCGCGG51220.10483795862769119No Hit
TGGGTG51210.10481749045927499No Hit
GGATGG51150.1046946814487779No Hit
GTGGAG51080.1045514042698646No Hit
GGGAAG50450.10326190965964507No Hit
CGGGGA50130.10260692827032719No Hit
GGGACG50130.10260692827032719No Hit
TGGGAG50030.10240224658616535No Hit
AGGGTG50010.10236131024933298No Hit
GGGAGT49760.10184960603892841No Hit
AGGGGC49700.1017267970284313No Hit
GCTGGG49340.10098994296544869No Hit
GGTGCG49270.10084666578653542No Hit
CGAGGG49230.10076479311287069No Hit
AGGGAG49070.10043730241821175No Hit
GGCGTG48980.10025308890246612No Hit
GGTGTG48860.10000747088147191No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)