FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483607

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483607
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6947160
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG205130.295271736939987No Hit
GTGGGG129980.18709803718353976No Hit
GGGGGT125700.18093724629920716No Hit
GGGGTG123800.1782023157664427No Hit
GGGTGG122540.17638862499208308No Hit
TGGGGG118960.17123544009350583No Hit
GGTGGG110400.15891385832484065No Hit
CGGGGG101010.14539754374449415No Hit
GGCGGG100400.1445194870997645No Hit
GGGGCG97790.14076255621001962No Hit
GCGGGG95910.13805641441970531No Hit
GGGAGG91180.1312478768302443No Hit
GGGCGG88860.12790838270602664No Hit
GGAGGG88130.12685759360659607No Hit
AGGGGG88030.1267136498943453No Hit
TGGGGT87170.12547573396898878No Hit
GGGGGC87090.12536057899918818No Hit
GGGTGT86170.12403629684648114No Hit
GGTTGG84060.12099908451799009No Hit
GGGGGA83060.11955964739548247No Hit
GGGGAG81730.11764519602254733No Hit
TGTGGG81020.11662319566556693No Hit
GAGGGG79540.11449282872425567No Hit
GTTGGG78570.11309657471542328No Hit
GCAATT78300.11270792669234624No Hit
GTGTGG78050.11234806741171931No Hit
TTGGGG77640.11175789819149119No Hit
GTGGTG77400.11141243328208937No Hit
TGGTGG76940.11075029220573586No Hit
GGGTTG76550.1101889117279579No Hit
GGTGTG74950.1078858123319457No Hit
GGTGGT73790.10621606526983687No Hit
GTGGGT72130.10382659964647423No Hit
GGGGTT70820.10194093701598927No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)