FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483609

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483609
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9113466
Sequences flagged as poor quality0
Sequence length6
%GC60

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG766970.8415788241268471No Hit
GGGGGT320050.35118362212576426No Hit
GGTGGG295750.3245197820456015No Hit
TGGGGG292370.3208109845365089No Hit
GTGGGG273430.30002855115715577No Hit
GCGGGG272790.29932629364064123No Hit
CGGGGG269350.2955516594893754No Hit
GGGGCG268180.2942678449669972No Hit
GGGGTG263930.2896044161463926No Hit
GGGGAG249150.2733866566243842No Hit
GGAGGG246990.2710165375061475No Hit
GGGTGG244700.2685037723298688No Hit
AGGGGG237660.2607789396482085No Hit
GAGGGG233790.25653247622803443No Hit
GGGAGG228200.25039869573222745No Hit
GGCGGG212640.2333250598619669No Hit
GGGGGC208720.22902373257331515No Hit
GGGCGG205900.22592941039117279No Hit
GGGGCT175680.1927696882832503No Hit
GGGGGA175510.19258315113042612No Hit
GGTGGT167230.1834976945105188No Hit
TGGGGT157830.17318328723671103No Hit
GGGGTT155290.17039620271804384No Hit
GGGTTG153940.16891487826914592No Hit
GTAGGG152140.16693977900394869No Hit
GTCGGG147130.16144241938248302No Hit
GGGCCG146620.16088280792401047No Hit
CCGGGG144520.158578525447947No Hit
TAGGGG143380.15732762924665544No Hit
TTGGGG141300.15504529231798309No Hit
GGGGCC140320.15396996049582015No Hit
GCCGGG139140.15267517319974638No Hit
GGTTGG134010.14704614029393426No Hit
GGGGTC133550.14654139270393943No Hit
CGGGGT132140.14499423161286826No Hit
GTGGTG132090.14493936774439053No Hit
GGGTCG131380.1441603008120072No Hit
GGGTGT130450.14313983285832196No Hit
GCGCGG129680.14229492928376536No Hit
GTGCGG128880.14141710738812216No Hit
TGTGGG127540.13994675571291976No Hit
TGGGTG126630.1389482333066256No Hit
GTTGGG126520.13882753279597465No Hit
GTGGAG126170.13844348571663076No Hit
GGCTGG125800.13803749308989577No Hit
TCGGGG125370.13756566382098753No Hit
GGGAGT124890.1370389706836016No Hit
TGCGGG124730.13686340630447297No Hit
GGGATG124300.13639157703556473No Hit
GGGCTG123480.13549180959253046No Hit
GGTAGG123340.13533819076079287No Hit
GGTGAG123050.13501998032362222No Hit
CTGGGG122690.13462496047058276No Hit
GCTGGG122040.13391173018037264No Hit
GTGGCG120260.1319585764625665No Hit
GCGGGT119890.1315525838358315No Hit
GGGTAG119780.13143188332518055No Hit
GCGGTG115190.12639538019892763No Hit
ATGGGG115180.12638440742523208No Hit
GCAGGG115140.1263405163304499No Hit
GGAAGG115030.12621981581979896No Hit
GGCCGG114470.12560534049284872No Hit
CGGTGG114110.12521032063980927No Hit
GTGAGG113710.12477140969198766No Hit
TGGTGG113710.12477140969198766No Hit
GTGGGT113090.12409109772286415No Hit
GAGTGG112330.12325716692200311No Hit
GGGGAT111430.12226961728940448No Hit
TGAGGG110740.12151249590441222No Hit
GATGGG109950.12064564678246455No Hit
GTGTGG108190.11871443861204947No Hit
GGTGTG108110.11862665642248514No Hit
TGGGGC107900.1183962281748788No Hit
AGGGGT107900.1183962281748788No Hit
CAGGGG107620.11808899051140367No Hit
GCGTGG107210.11763910678988652No Hit
GGGCGT107120.11754035182662667No Hit
GAAGGG107000.11740867854228018No Hit
GGCGGT107000.11740867854228018No Hit
GGTCGG106950.11735381467380247No Hit
GGGGAC106500.11686003985750318No Hit
ACGGGG106280.1166186388362013No Hit
GGGCAG105720.11600416350925104No Hit
GGTGCG105380.11563108920360267No Hit
CGCGGG105280.11552136146664727No Hit
CGGGTG105020.11523606935056323No Hit
CGTGGG104660.11484104949752377No Hit
CGGGCG104490.1146545123446996No Hit
TGGGCG102400.11236120264233168No Hit
TGGGAG102400.11236120264233168No Hit
GGAGGT102230.11217466548950751No Hit
GGCAGG102220.11216369271581196No Hit
CGGGGC102100.11203201943146548No Hit
CGGAGG101540.11141754410451522No Hit
GGCGCG99850.10956314534996893No Hit
CGGCGG99660.10935466264975367No Hit
AAGGGG99340.10900353389149639No Hit
AGGTGG99080.10871824177541232No Hit
TGGAGG99060.10869629622802127No Hit
GGATGG98890.10850975907519707No Hit
GAGGGT98840.10845489520671939No Hit
TGGCGG98430.10800501148520224No Hit
AGTGGG97500.10698454353151698No Hit
GCGGCG97170.10662244199956415No Hit
GCGAGG97130.10657855090478201No Hit
GGTGGC95970.10530570915609934No Hit
GGCGAG95850.10517403587175286No Hit
AGCGGG95760.105075280908493No Hit
AGGGCG95660.10496555317153759No Hit
AGGCGG95110.10436205061828288No Hit
GAGGCG93910.10304531777481805No Hit
GGGCGC93440.10252959741112767No Hit
TGGTTG93330.10240889690047673No Hit
GGTTGT92150.10111410960440298No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)