FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483611

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483611
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11903021
Sequences flagged as poor quality0
Sequence length6
%GC59

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG870890.7316545942412435No Hit
TGGGGG379920.31917947552978354No Hit
GCGGGG348410.2927072043307325No Hit
GGGGGT348160.292497173616681No Hit
GGTGGG347840.29222833430269507No Hit
GGGCGG341140.2865995111661149No Hit
CGGGGG332860.2796432939167292No Hit
GGGAGG329840.27710612289098707No Hit
GGGGTG325710.2736364154948563No Hit
GGGGCG315430.26499995253305864No Hit
AGGGGG314010.26380697807724607No Hit
GGGGAG301830.25357428168865703No Hit
GTGGGG300000.25203685686180005No Hit
GGCGGG293890.24690370621038138No Hit
GAGGGG288780.2426106784151687No Hit
GGGTGG287190.24127488307380118No Hit
GGAGGG285040.2394686189329583No Hit
GGGGGA269870.22672395520431324No Hit
GGGGGC246280.2069054570264137No Hit
GCCGGG176440.14823127674898667No Hit
GGGCCG169040.14201436761306227No Hit
GGCCGG168720.14174552829907633No Hit
TCGGGG166900.14021650470078142No Hit
GGTAGG165870.13935117815888923No Hit
GGTTGG165070.13867907987392444No Hit
TAGGGG163830.13763732753222901No Hit
GGGGTA162950.13689801941876772No Hit
GGGTTG162740.13672159361896447No Hit
GGCAGG161600.1357638535628896No Hit
GGGTAG160160.13455407664995298No Hit
CGGGGT159710.13417602136466028No Hit
GTGGTG158790.13340310833695077No Hit
GGCTGG158150.13286542970897894No Hit
ACGGGG158050.1327814174233583No Hit
CCGGGG155690.13079872748271215No Hit
GGGCTG155070.13027785131186445No Hit
GGGGTT154500.12979898128382703No Hit
TGTGGG153430.1289000498276866No Hit
TTGGGG152370.12800951960010823No Hit
ATGGGG151870.12758945817200523No Hit
GGGTCG151610.12737102622939167No Hit
TGGGTG150600.12652250214462363No Hit
TGGTGG150110.12611084194508268No Hit
GCTGGG148970.12515310188900786No Hit
GTTGGG148830.125035484689139No Hit
AGGGGT148740.12495987363208047No Hit
GTCGGG148120.12443899746123276No Hit
GGGGCA147780.12415335569012269No Hit
GGCGGT147210.12367448566208528No Hit
GCGGTG145820.12250671489195894No Hit
GGGTGT145540.12227148049222127No Hit
TGGCGG145110.12191022766405268No Hit
GGGATG143070.12019637703739244No Hit
TGGGGT142440.11966709963798267No Hit
TGGGGA142000.11929744558125202No Hit
GGTGTG141730.11907061241007641No Hit
GGGGCC141390.11878497063896636No Hit
TGCGGG141160.11859174238203898No Hit
AGGGTG141140.11857493992491486No Hit
GAGGGT140650.11816327972537391No Hit
GGGAAG140010.11762560109740208No Hit
CTGGGG139570.11725594704067144No Hit
AGGTGG139180.1169282991267511No Hit
GGGGTC138980.1167602745555099No Hit
GGGGCT138870.11666786104132724No Hit
GCAGGG137730.11571012098525241No Hit
AGTGGG137590.11559250378538356No Hit
GCGGGT137120.11519764604296673No Hit
AAGGGG136980.1150800288430979No Hit
TGGGGC136710.11485319567192229No Hit
CGCGGG136520.11469357232924314No Hit
GCGCGG135470.11381144333022684No Hit
AGGGAG135090.11349219664486855No Hit
GGGCAG134960.11338298067356178No Hit
GGTGGT134870.11330736961650324No Hit
GTGGCG134240.11277809221709345No Hit
GGGCGT133850.11245044430317312No Hit
GCGGGA132960.11170273496114978No Hit
GTGGGT131540.11050976050533726No Hit
GCGGCG131490.11046775436252697No Hit
TGAGGG131130.11016531013429279No Hit
CGGGTG130440.10958562536351064No Hit
GTGGAG128970.10835064476488784No Hit
GAAGGG128420.10788857719397453No Hit
GGGAGA126190.10601510322463514No Hit
GTAGGG125660.10556983811084597No Hit
CGGCGG123970.10415003048385783No Hit
GGCGGA123250.10354514202738953No Hit
TGGGCG122820.10318388919922095No Hit
CGGTGG122370.10280583391392822No Hit
GGGACG121920.10242777862863553No Hit
GTGCGG121730.1022681552859564No Hit
GGGAGT121490.10206652580046695No Hit
GCGAGG121420.10200771720053255No Hit
GGTCGG121320.10192370491491193No Hit
GGGGAT120240.10101637223020946No Hit
GGATGG119160.10010903954550698No Hit
AGGCGG119040.10000822480276225No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)