FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483613

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483613
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9590081
Sequences flagged as poor quality0
Sequence length6
%GC56

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG460060.4797248323554305No Hit
TGGGGG292230.3047210967248348No Hit
GGGGTG283590.2957117880443345No Hit
GGGTGG259690.270790205004525No Hit
GGGGGT254580.26546178285668287No Hit
GTGGGG250970.26169747679920535No Hit
GGTGGG236980.24710948739640465No Hit
AGGGGG203160.2118438832789838No Hit
CGGGGG201840.2104674611194629No Hit
GGGGCG187910.19594203636027685No Hit
GGCGGG176080.18360637412760122No Hit
GGAGGG175990.18351252716217933No Hit
GCGGGG174100.18154174088831992No Hit
TGGGTG172720.18010275408518447No Hit
GGGAGG170220.17749589393457677No Hit
TGTGGG170040.177308200003733No Hit
GGGCGG167200.17434680687264267No Hit
GAGGGG166960.17409654829818436No Hit
GGGGGA165540.1726158517326392No Hit
GGGGGC163070.17004027390383877No Hit
GGTGTG160370.16722486494118247No Hit
GGGGAG160160.16700588868853142No Hit
TTGGGG159330.16614041111852967No Hit
GGGGTT156260.16293918685358338No Hit
TGGGGT155240.16187558791213547No Hit
GGTGGT155190.1618234507091233No Hit
GGTTGG151300.15776717631477774No Hit
TGGTGG151070.15752734518092185No Hit
GGGTTG149400.15578596260031588No Hit
AGTGGG143010.14912282805536262No Hit
GTGTGG142610.1487057304312654No Hit
GTGGGT140330.14632827397391118No Hit
GGGTGT135550.14134395736594926No Hit
GTTGGG135150.140926859741852No Hit
GTGGTG132230.13788204708594223No Hit
AGGTGG130020.13557758271280504No Hit
TCGGGG124910.1302491605649629No Hit
TGTGTG124190.12949838484158788No Hit
TGGGCG120450.12559852205627878No Hit
TGCGGG116830.12182378855819882No Hit
AGGGGT115870.12082275426036548No Hit
TAGGGG113330.11817418434734805No Hit
GGTCGG112470.11727742445553901No Hit
GTAGGG111920.11670391522240532No Hit
GGGTGA110880.1156194613997525No Hit
TGGCGG110880.1156194613997525No Hit
GGGTTT110060.11476441127035318No Hit
GAGGTG109480.11415961971541219No Hit
CTGGGG108900.11355482816047122No Hit
GGGTCG108620.11326285982360315No Hit
TTGGGT107880.11249122921902328No Hit
ATGGGG107670.11227225296637225No Hit
CGGGGT107130.11170917117384097No Hit
TGGTTG106830.11139634795576804No Hit
GTGCGG106800.11136506563396076No Hit
GGGGTA106550.11110437961889999No Hit
GGTGCG105710.11022847460829581No Hit
CGGTGG104700.1091753031074503No Hit
GGGTGC104570.10903974637961869No Hit
GGGTAG103730.10816384136901451No Hit
GTGGTT103410.10783016326973673No Hit
TGTTGG102340.10671442712527662No Hit
TTGTGG102080.10644331366961343No Hit
TGGGAG102050.10641203134780615No Hit
TGTGGT101270.10559869098081653No Hit
GTGGGC101210.10553612633720194No Hit
GGATGG100240.10452466459876616No Hit
GGTAGG100210.10449338227695887No Hit
GGGCTG99740.10400329256864463No Hit
GGGCGT99600.1038573084002106No Hit
GTGGCG98760.10298140338960642No Hit
TGGGGC98650.10286670154297965No Hit
GGGGTC98340.10254345088430432No Hit
GGGGCT98310.10251216856249701No Hit
GTCGGG98150.10234532951285812No Hit
GTGTTG98000.10218891790382167No Hit
AGGGTG97900.10208464349779735No Hit
TGAGGG97770.10194908676996577No Hit
GGTTTG97320.10147985194285637No Hit
GGGAGT97310.10146942450225394No Hit
GGGGAT97260.10141728729924179No Hit
CGTGGG97110.10126087569020534No Hit
GGAGTG97100.1012504482496029No Hit
TTGGTG96880.10102104455634942No Hit
CGGGTG96810.1009480524721324No Hit
GGCGTG96780.10091677015032512No Hit
TGGGGA96670.10080206830369838No Hit
GCTGGG96540.10066651157586677No Hit
GATGGG96520.10064565669466191No Hit
TGGAGG96270.10038497067960114No Hit
GCGTGG96100.10020770418935983No Hit
GCGGTG95920.10002001025851606No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)