FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483617

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483617
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8253731
Sequences flagged as poor quality0
Sequence length6
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG387460.469436185889751No Hit
GGGGGT221850.26878753378320663No Hit
GGGGTG217980.2640987451614306No Hit
TGGGGG212940.25799241579353627No Hit
GTGGGG208600.25273418772673834No Hit
GGTGGG206140.24975371744002806No Hit
GGGTGG202810.24571917839338353No Hit
CGGGGG162810.19725624690215857No Hit
AGGGGG159710.1935003697115886No Hit
GGGGCG156730.18988988131549236No Hit
GGCGGG149910.1816269514962385No Hit
GGGTGT147510.17871917560676498No Hit
GGGGTT146270.17721682473053701No Hit
GGTGGT143600.17398192405349774No Hit
GCGGGG142700.1728915080949452No Hit
GGGGAG141430.17135281002009878No Hit
GTTGGG136640.16554937397402458No Hit
GTGTGG136220.16504051319336674No Hit
GGGGGC135280.16390163430332294No Hit
GGAGGG135010.16357450951575717No Hit
TTGGGG131860.1597580536608232No Hit
GGGCGG131510.15933400301027498No Hit
GTGGGT129720.15716528682604267No Hit
GAGGGG129220.15655950018240236No Hit
GGGGGA129190.15652315298378394No Hit
GTGGTG128970.1562566068605822No Hit
GGGTTG128580.15578409327854276No Hit
TGTGGG127630.15463309865562616No Hit
GGGAGG127390.15434232106667883No Hit
TGGGGT126940.15379711308740254No Hit
TGGTGG126780.15360326136143765No Hit
GGTTGG120620.14613996991178899No Hit
TGGGTG119040.1442256841178856No Hit
GGTGTG118540.14361989747424528No Hit
GGGTAG104130.12616112640453148No Hit
AGGGGT102100.12370163263135181No Hit
TCGGGG101510.12298680439185625No Hit
TGCGGG101340.12278083693301853No Hit
CGGGGT100670.12196908283054052No Hit
CGGTGG98920.11984882957779942No Hit
GGGTTT98900.1198245981120538No Hit
GTCGGG98890.119812482379181No Hit
GTAGGG97590.11823743710571619No Hit
TGGGTT97050.11758318753058465No Hit
GTGTTG97040.11757107179771184No Hit
TGGCGG96150.1164927715720321No Hit
AGTGGG96080.11640796144192245No Hit
ATGGGG95860.1161414153187207No Hit
GGGTCG94810.11486926336707606No Hit
CTGGGG94440.11442098125078223No Hit
GGCTGG94300.11425136099056295No Hit
GGGGTA93890.11375461594277789No Hit
GGCGGT93880.11374250020990508No Hit
GTGTGT91970.11142839523119907No Hit
AGGTGG91520.11088318725192278No Hit
GTGGCG91300.11061664112872106No Hit
GGGGCT90920.11015624327955441No Hit
GGATGG90660.10984123422486146No Hit
GGGGAT90650.10982911849198866No Hit
GGTGTT90480.10962315103315096No Hit
GTTTGG89930.10895678572514661No Hit
GCGGGT89850.10885985986216415No Hit
TTTGGG88670.10743020338317302No Hit
GGTTGT88220.10688499540389673No Hit
TGTTGG88160.10681230100665991No Hit
TTGGTG88160.10681230100665991No Hit
TAGGGG88100.10673960660942305No Hit
TGAGGG87910.10650940768483974No Hit
GTGGTT87640.10618228289727397No Hit
GGGTGC87250.10570976931523453No Hit
GGGCGT85790.10394087231580482No Hit
GGGGTC85120.1031291182133268No Hit
GGGATG84730.10265660463128735No Hit
TGGTTG84650.10255967876830491No Hit
TTGGGT84460.10232947984372158No Hit
GGTGAG84390.10224466971361194No Hit
GGTCGG84130.10192966065891898No Hit
GGAGGT83740.10145714707687954No Hit
GTTGGT83320.10094828629622168No Hit
GTGCGG83190.1007907817688752No Hit
TTGTGG83090.10066962444014714No Hit
AGGGTG82910.10045154124843662No Hit
TGGGCG82680.10017287939236208No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)