FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483621

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483621
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6943695
Sequences flagged as poor quality0
Sequence length6
%GC56

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCAATT343790.4951110323826147No Hit
GGGGGG295920.4261707923519106No Hit
ATCTCG236620.340769575852626No Hit
GGGGGT161830.23306035187317417No Hit
CGGGGG141240.20340755174298408No Hit
GTGGGG140320.20208260875513684No Hit
GGGCGG133710.1925631814185387No Hit
GGGTGG129020.18580885249136087No Hit
GGCGGG127210.18320217117831356No Hit
GCGGGG124540.17935695620271339No Hit
GGTGGG121900.17555494588976042No Hit
GGGGTG119620.17227139152857376No Hit
GGGGGC119240.17172413246837598No Hit
GGGGCG117890.16977992264925232No Hit
TGGGGG116010.1670724304566949No Hit
AGGGGG111710.16087976214393057No Hit
GGGGGA108350.15604083992744497No Hit
GAGGGG105690.15221002650606053No Hit
GGAGGG103420.1489408736990896No Hit
GGGGAG99240.14292102403691406No Hit
GGGAGG98440.1417688996996556No Hit
GGGGTT86430.1244726330865627No Hit
GGGTGT81340.11714224199075565No Hit
CGGGGT80800.11636455806310617No Hit
GGCCGG79600.11463637155721845No Hit
ATCTCT79400.11434834047290383No Hit
GTGGGT78710.1133546332320184No Hit
CTGGGG78290.11274976795495771No Hit
CGGTGG77770.11200088713573969No Hit
TTGGGG76990.11087756590691267No Hit
GTGTGG76790.11058953482259806No Hit
GTTGGG76050.10952381981063396No Hit
GGGCCG73510.10586582503983831No Hit
GGGGCT73470.10580821882297538No Hit
GGGTTG72140.10389281211228316No Hit
GTGGTG70540.10158856343776619No Hit
CCGGGG70380.10135813857031452No Hit
GTGGCG69840.10058045464266503No Hit
GGTGGT69820.10055165153423358No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)