FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483623

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483623
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3746221
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG176060.4699669346789738No Hit
GGGGGT92470.24683541093811603No Hit
AGGGGG90530.2416568590053817No Hit
GTGGGG90140.2406158099055021No Hit
CGGGGG83280.22230402317428682No Hit
GGTGGG81710.2181131332081049No Hit
GGGGTG79930.21336167834198785No Hit
TGGGGG79020.21093256377560213No Hit
GGGTGG78550.2096779661424139No Hit
GGAGGG77840.2077827229092998No Hit
GGGGAG72400.19326142264431276No Hit
GGGGGA70440.18802948357825128No Hit
GAGGGG70270.18757569294497042No Hit
GGGAGG68900.18391867431206008No Hit
GCGGGG68900.18391867431206008No Hit
GGGGGC66630.1778592346794276No Hit
GGCGGG61630.16451245134763806No Hit
GGTGGT52860.1411021933836792No Hit
GGGCGG50780.1355499315176547No Hit
GGGGCG48590.1297040404183309No Hit
TTGGGG48320.12898331411841427No Hit
GGGTGT48150.1285295234851334No Hit
GTGTGG48000.12812911998517973No Hit
GGGTAG47550.12692790948531865No Hit
GGGTTG47330.1263406510187199No Hit
GTGGGT46620.12444540778560581No Hit
ATGGGG46490.12409839141897928No Hit
TAGGGG45960.1226836323858096No Hit
GGGGTT45930.12260355168581885No Hit
TGGTGG45890.12249677741916455No Hit
AGTGGG45150.12052145348605968No Hit
GGTTGG44980.12006766285277884No Hit
GGGGAT44960.1200142757194517No Hit
AGGGGT44570.1189732266195721No Hit
AGGTGG44280.1181991131863283No Hit
TGGGGT43760.11681104771982219No Hit
GTTGGG43450.11598354715325124No Hit
AAGGGG43180.11526282085333459No Hit
TGTGGG42380.11312733552024828No Hit
CGGGGT42340.11302056125359396No Hit
GTGGTG42330.11299386768693037No Hit
CGGTGG42020.11216636712035942No Hit
AGGGTG41820.11163249578708785No Hit
GGAGGT41740.11141894725377921No Hit
GGATGG41730.11139225368711562No Hit
TCGGGG40720.10869620345409414No Hit
TGGCGG40620.10842926778745834No Hit
GGGGCT40400.1078420093208596No Hit
GTCGGG40280.10752168652089666No Hit
TGGGTG39680.1059200725210819No Hit
GGCAGG39420.10522603978782887No Hit
GGAGGA39240.10474555558788444No Hit
GGGGAA39040.10421168425461284No Hit
CGTGGG38970.10402482928796779No Hit
GGTGTG38440.1026100702547981No Hit
GTAGGG38340.1023431345881623No Hit
GGGTGA37860.10106184338831051No Hit
GTGAGG37670.10055466562170251No Hit
GGGGTA37480.1000474878550945No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)