FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483625

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483625
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10217753
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG354020.3464753943455082No Hit
GTGGGG217110.21248311639555195No Hit
GGGGGT215230.21064318152924622No Hit
TGGGGG202410.198096391643055No Hit
GGGTGG191270.18719379887143484No Hit
GGGGTG183510.17959917410413032No Hit
GGTGGG181440.1775732883736767No Hit
AGGGGG168500.16490905583644466No Hit
CGGGGG163580.1600939071437722No Hit
GGGGCG149330.14614759233267824No Hit
GGGGTT144010.14094096813653648No Hit
GGCGGG143190.1401384433544244No Hit
GGGGGC143130.140079722028904No Hit
GCGGGG140660.13766236079498104No Hit
TTGGGG138560.1356071144017672No Hit
GGAGGG138410.1354603110879662No Hit
GGGTTG136790.13387483529891553No Hit
GGGTGT135430.1325438185871199No Hit
GGGCGG133800.13094855591048246No Hit
GGTGGT133740.1308898345849621No Hit
GGGAGG132820.12998944092698267No Hit
GAGGGG131940.1291281948193502No Hit
GTGGGT131690.1288835226296819No Hit
GTGTGG131620.12881501441657475No Hit
GGGGAG129410.12665211225990686No Hit
TGTGGG123680.12104422567270905No Hit
TGGGGT122950.12032978287887758No Hit
GGGGGA120790.11821581516014332No Hit
TGGTGG120560.11799071674564848No Hit
GTTGGG118760.11622907698003661No Hit
GGTTGG114630.11218709240671604No Hit
GGTGTG114500.11205986286808851No Hit
GTAGGG112750.1103471575404103No Hit
GTGGTG112250.10985781316107367No Hit
TGGGTG109210.10688259933470695No Hit
GGGGCT104950.10271338522275886No Hit
AGGGGT102470.10028623710124918No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)