FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483627

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483627
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4709664
Sequences flagged as poor quality0
Sequence length6
%GC57

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG225840.4795246539880552No Hit
CGGGGG117720.24995413685562282No Hit
GGGGGT112960.23984725874287424No Hit
GTGGGG104670.2222451537944108No Hit
TGGGGG103110.21893281558939237No Hit
GGGCGG101520.21555677857273894No Hit
GGGTGG100730.21387937653301806No Hit
GGGGCG99150.21052457245357628No Hit
GGCGGG98450.20903826684876034No Hit
GCGGGG97250.20649031438336155No Hit
AGGGGG96310.2044944182854658No Hit
GGTGGG93740.19903755342207002No Hit
GGGGTG89330.18967382811172942No Hit
GGAGGG86190.1830066858272692No Hit
GGGGGC83390.17706146340800533No Hit
GGGAGG83050.17633954354280898No Hit
GGGGAG82840.17589365186136421No Hit
GGGGGA82230.17459844269145314No Hit
GAGGGG81980.1740676192611617No Hit
GGTGGT59910.12720652683503536No Hit
TGGGGT58850.12495583549059976No Hit
CTGGGG56700.12039075399009355No Hit
GGGGTT56410.11977499881095552No Hit
GGGTGT56200.11932910712951071No Hit
GGCCGG55970.11884074957364262No Hit
CGGGGT55850.11858595432710274No Hit
GTGTGG55110.11701471697344015No Hit
GTGGGT53530.11365991289399838No Hit
CAGGGG53410.1134051176474585No Hit
CGGTGG53240.11304415771486034No Hit
GGCGGT52970.11247086841014561No Hit
GGGGCT52350.1111544263030229No Hit
CGCGGG51850.11009277944244006No Hit
TGGTGG51810.11000784769359342No Hit
CGGGCG51360.10905236551906887No Hit
TGTGGG50970.10822428096781427No Hit
ATGGGG50970.10822428096781427No Hit
GCCGGG50740.10773592341194616No Hit
GGGCGT50570.10737496347934798No Hit
GTCGGG50560.10735373054213634No Hit
GTGGCG50480.10718386704444309No Hit
GGGCCG49780.10569756143962712No Hit
GCGGGT49740.10561262969078049No Hit
GGGTTG49480.10506057332327742No Hit
CGGCGG49080.10421125583481114No Hit
CCGGGG49000.1040413923371179No Hit
GGTTGG48840.10370166534173139No Hit
GGCGCG48030.10198179742758719No Hit
GGCTGG47910.10172700218104731No Hit
TGCGGG47470.10079275294373441No Hit
AGGTGG47450.1007502870693111No Hit
AGTGGG47410.10066535532046447No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)