FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483629

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483629
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7403010
Sequences flagged as poor quality0
Sequence length6
%GC56

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG330530.44648055318039553No Hit
GGGGGT175130.23656593736871892No Hit
GTGGGG160820.21723596212891785No Hit
CGGGGG157930.2133321446276582No Hit
GGCGGG155780.2104279205350256No Hit
GGGTGG154000.20802349314670657No Hit
GGGGCG144810.19560962365308165No Hit
TGGGGG144540.19524490713912315No Hit
GGGGTG142390.19234068304649055No Hit
GGGCGG140240.18943645895385797No Hit
GGTGGG137940.18632961457569286No Hit
GCGGGG131740.1779546427736826No Hit
GGAGGG128440.17349699649196745No Hit
GGGGGC128220.17319982007318646No Hit
GAGGGG126650.17107906108461288No Hit
GGGGGA123780.16720225962142424No Hit
GGGGAG117170.15827345903895848No Hit
GGGAGG115390.1558690316506394No Hit
AGGGGG108270.1462513220973631No Hit
GTGGGT92630.12512478032584043No Hit
GTCGGG92080.12438183927888792No Hit
TTGGGG89090.1203429415872733No Hit
GGGTGT88080.11897863166468775No Hit
GGGGTT87680.11843831090326772No Hit
GGCCGG85640.11568267502002565No Hit
GGGTCG85140.11500727406825062No Hit
TGCGGG84900.1146830816113986No Hit
CTGGGG84170.11369699622180707No Hit
GTGTGG84070.11356191603145208No Hit
GGTGGT83930.11337280376495507No Hit
GGTTGG83240.11244075045150553No Hit
CGGGGT82840.11190042969008553No Hit
GACGGG80940.10933390607334044No Hit
GGCTGG79460.10733471925608638No Hit
CCGGGG79220.10701052679923437No Hit
GGCGGT78980.10668633434238237No Hit
GTGGCG78890.10656476217106287No Hit
GGAGGT78610.10618653763806885No Hit
GTTGGG78520.10606496546674933No Hit
ATGGGG78060.10544359659111632No Hit
GGGCCG77600.1048222277154833No Hit
CGGTGG77310.10443049516345379No Hit
GGGTTG77150.10421436685888578No Hit
TGTGGG77040.10406577864949526No Hit
GGGCGT76740.10366053807843026No Hit
TGGTGG76690.10359299798325275No Hit
GGGGAT76370.10316074137411675No Hit
GGGGCT75650.1021881640035607No Hit
TCGGGG75230.1016208272040697No Hit
CGGGCG74960.10125611069011119No Hit
TGGGGT74860.10112103049975617No Hit
GGGGCA74080.10006740501498715No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)