FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483631

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483631
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6122029
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG378430.6181447360017406No Hit
GGGGGT197260.32221343610100506No Hit
GTGGGG182920.2987898293196586No Hit
GGGTGG175210.28619596542257475No Hit
GCAATT174770.2854772494543884No Hit
TGGGGG173990.28420316205623986No Hit
GGGGTG151430.24735263423286627No Hit
AGGGGG151300.24714028633317484No Hit
GGTGGG149550.24428175691425177No Hit
CGGGGG143550.23448108462080136No Hit
GGAGGG138330.22595449972549952No Hit
GGGAGG136250.2225569333304367No Hit
GGGGAG133560.2181629652522064No Hit
GGCGGG132810.2169378812155251No Hit
GAGGGG129710.21187420053057573No Hit
GCGGGG125470.20494839210987076No Hit
GGGGGA119760.19562141897727045No Hit
GGGGCG114590.18717650635108066No Hit
GGGCGG110260.18010368784597394No Hit
GGGGGC110210.18002201557686184No Hit
GTTGGG104130.1700906676528321No Hit
GTGGGT100310.16385090629266866No Hit
TTGGGG100310.16385090629266866No Hit
GGTGGT100070.16345887940093065No Hit
GGGTGT99110.16189077183397857No Hit
GTGTGG98650.16113938695814736No Hit
ATGGGG94330.15408290290686305No Hit
TGGTGG93260.1523351163478644No Hit
TGGGGT92150.15052199197357607No Hit
GGTTGG89740.1465853886023735No Hit
GGGGTT89350.14594834490329922No Hit
GTGGTG89210.14571966254978538No Hit
GTAGGG89090.14552364910391638No Hit
GGGTTG85150.1390878742978839No Hit
TGAGGG84950.13876118522143557No Hit
TGTGGG84530.13807513816089403No Hit
TAGGGG83960.13714407429301625No Hit
GGGTAG83570.13650703059394198No Hit
GGTAGG82180.13423654151262596No Hit
AGGGGT81990.13392618689000005No Hit
TGGGTG81020.13234174486922554No Hit
GGATGG79410.12971189780381637No Hit
AGGTGG78910.1288951751126955No Hit
GTGGAG77570.12670635830049154No Hit
GGTGTG77450.12651034485462254No Hit
GGGGAT74520.12172434988465426No Hit
GGGGTA74430.12157733980025248No Hit
CGGTGG73660.12031958685592636No Hit
GGTGAG72660.11868614147368461No Hit
TTGTGG72070.117722408698162No Hit
CTGGGG72050.11768973979051715No Hit
GTCGGG71580.11692202046086354No Hit
GAGGGT71370.11657899693059279No Hit
GGCTGG70710.11550092297831324No Hit
AAGGGG70490.11514156499422006No Hit
TGGGAG70430.11504355827128554No Hit
CGGGGT70200.11466786583336995No Hit
GGCGGT69940.1142431700339871No Hit
GGAGGT67810.1107639313698122No Hit
TGCGGG67600.11042090783954144No Hit
GTGAGG67130.10965318850988781No Hit
TGGTTG66170.10808508094293574No Hit
GATGGG66150.10805241203529091No Hit
GTGTGT65930.10769305405119772No Hit
GTGGGA65770.10743170279003905No Hit
CGTGGG65500.1069906725368338No Hit
AGGGTG65500.1069906725368338No Hit
GGTGGA64750.10576558850015248No Hit
CAGGGG64480.10532455824694721No Hit
TTGGGT64430.10524288597783511No Hit
GGGATG64360.1051285448010782No Hit
GGGGCT62840.10264570782007075No Hit
TGGAGG62740.10248236328184658No Hit
TGGGCG61870.10106126579929628No Hit
GGAAGG61580.10058756663844617No Hit
GTGTTG61530.10050589436933408No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)