FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483633

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483633
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5887966
Sequences flagged as poor quality0
Sequence length6
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG307100.5215723052748606No Hit
GGGGTG155360.2638602193015381No Hit
AGGGGG152440.2589009515340272No Hit
GGGTGG146290.24845591839355052No Hit
GGGGGT145470.2470632473081536No Hit
GGTGGG144830.24597628450979508No Hit
GCGGGG141760.24076225983641888No Hit
GGAGGG138110.2345631751270303No Hit
TGGGGG137320.23322145542280645No Hit
CGGGGG137150.23293273092949246No Hit
GTGGGG131080.22262356813881057No Hit
GAGGGG118260.20085034458419085No Hit
GGGGAG116790.19835372690671108No Hit
GGCGGG114810.1949909357492893No Hit
GGGGCG114480.19443047055638568No Hit
GGGGGA112130.1904392790311629No Hit
GGGGGC106590.18103025730787167No Hit
GGGCGG102420.17394801532481674No Hit
GGGAGG99260.16858113650792142No Hit
GTGTGG93470.1587475199415214No Hit
GGGTGT89010.15117274794046026No Hit
TTGGGG86610.1470966374466157No Hit
AGGTGG86060.1461625287917763No Hit
GGGGTA82780.14059184445018874No Hit
GGGGTT81710.13877457852168304No Hit
TGGTGG80990.13755174537352965No Hit
ATGGGG76150.12933158921094315No Hit
GTGGTG75760.12866922125569338No Hit
CTGGGG75540.12829557779375764No Hit
GGTTGG72660.12340424520114415No Hit
TGGGTG72570.123251391057625No Hit
GGAAGG71830.12199459032202291No Hit
GGGTTG71800.12194363894084986No Hit
GGTGGT71610.12162094686008716No Hit
CGGTGG69700.11837704225873588No Hit
TCGGGG69100.11735801463527472No Hit
TAGGGG68750.1167635818549224No Hit
GTGAGG68520.1163729545992623No Hit
AAGGGG68450.11625406804319181No Hit
GTAGGG68110.11567661905656385No Hit
GTGGCG67280.11426696417744259No Hit
AGGGGT66130.11231382789914207No Hit
GAGCGG65770.11170241132506539No Hit
GCGTGG65650.11149860580037317No Hit
TGGGAG65430.11112496233843742No Hit
CGTGGG65090.11054751335180944No Hit
GAGGTG64110.1088831015668229No Hit
GTTGGG63640.10808486326177834No Hit
GATGGG63150.10725265736928509No Hit
CGGGGT63110.10718472219438768No Hit
AGGGGC63100.10716773840066332No Hit
AGTGGG63050.10708281943204156No Hit
GGGGCT62700.10648838665168923No Hit
TGGGGA62010.10531650488470891No Hit
AGCGGG61880.10509571556629232No Hit
GCGGGT61250.10402573656165814No Hit
GGCGGA61080.10373701206834414No Hit
CGGAGG60920.10346527136875451No Hit
GGGAGT60790.10324448205033793No Hit
GGGTGA60280.10237830857039597No Hit
TGGGGT59770.101512135090454No Hit
GGTGTG59670.10134229715321047No Hit
GGGTAG59570.10117245921596695No Hit
TGGCGG59310.10073088057913379No Hit
GCCGGG59100.10037422091092238No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)