FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483635

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483635
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5252856
Sequences flagged as poor quality0
Sequence length6
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG255000.4854502008050478No Hit
GGTGGG133190.25355730292244827No Hit
GGGTGG126240.24032640529266366No Hit
GGGGGT124210.23646184094899994No Hit
CGGGGG119610.2277047000717324No Hit
GGGGGA118510.22561060116629886No Hit
TGGGGG115150.21921408087333824No Hit
AGGGGG114560.21809088236951477No Hit
GAGGGG111460.21218933090874753No Hit
GGGGTG109630.2087055118206172No Hit
GGAGGG109590.20862936276951055No Hit
GTGGGG108150.20588799692967027No Hit
GCGGGG106970.20364159992202335No Hit
GGGGGC100890.1920669441538089No Hit
GGGAGG99600.18961113725561868No Hit
GGGGAG93430.17786514612241416No Hit
GGCGGG88160.16783250863910984No Hit
GGGGTA83940.15979878374735573No Hit
TGGTGG82800.1576285357908155No Hit
GGGTTG80540.15332611440328842No Hit
GTGTGG77710.14793856903749122No Hit
AAGGGG76810.14622521538759106No Hit
TAGGGG74250.1413516761167639No Hit
TGGGTG71870.1368208075759168No Hit
TTGGGG71750.13659236042259676No Hit
GTAGGG70830.13484093224714327No Hit
GGTAGG68660.13070984622460619No Hit
GGTTGG68620.1306336971734995No Hit
AGGGAG67690.12886323173526934No Hit
GGGTAG66970.12749254881534922No Hit
ATGGGG66750.1270737290342625No Hit
GTCGGG66060.1257601579026724No Hit
GGAGGT66020.1256840088515657No Hit
GCTGGG65580.12484636928939227No Hit
TCGGGG63140.12020127717188517No Hit
GGGCGG63120.12016320264633183No Hit
GGGGTT62870.11968727107691511No Hit
GGATGG62770.11949689844914843No Hit
GGGGCG62550.11907807866806172No Hit
TGGGGT61140.11639382461655146No Hit
GGTGTG60230.1146614337038746No Hit
GGTGGA59860.11395705498113788No Hit
GTGGGA59110.11252926027288775No Hit
TGAGGG58760.11186295607570433No Hit
TGTGGG58730.11180584428737435No Hit
ACGGGG58500.11136798724351096No Hit
AGGTGG58000.11041612410467753No Hit
AGGGGT56690.10792224268093395No Hit
GGTGGT56630.10780801910427396No Hit
CGGGTG56580.1077128327903906No Hit
GTGAGG56220.10702749133043055No Hit
GTTGGG56080.10676096965155718No Hit
GGTGAG55970.10655155976101383No Hit
AGAGGG55810.10624696355658711No Hit
GAGTGG55810.10624696355658711No Hit
AGTGGG55730.10609466545437377No Hit
GGGTGA55610.10586621830105375No Hit
GGCAGG54910.10453360990668695No Hit
TGGGGA54720.10417190191393025No Hit
GGTATG54630.10400056654894024No Hit
GCGTGG54360.10348656045397017No Hit
GGGAGT53740.10230625016181673No Hit
GGGGCT53620.1020778030084967No Hit
GGGAAG53460.10177320680407001No Hit
GGGTGT53200.10127823797187663No Hit
GTATGG52840.10059289651191657No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)