FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483637

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483637
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17345440
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG631140.3638650850021677No Hit
GGGTGG367010.2115887518563957No Hit
GGTGGG363070.20931726148198027No Hit
GGGGTG343280.19790792277393945No Hit
GTGGGG341090.1966453430988202No Hit
GGGGGT340100.19607458790321836No Hit
TGGGGG334590.1928979605014344No Hit
AGGGGG289360.166821942827625No Hit
GGGGCG267990.1545017018882196No Hit
GAGGGG265510.15307193129721702No Hit
GGGCGG262280.15120977040651606No Hit
GGGGGC259410.14955515685967033No Hit
CGGGGG255900.14753157025708197No Hit
GGAGGG250930.14466626387108084No Hit
GGTTGG248900.14349592745989725No Hit
GCGGGG243600.1404403693420288No Hit
GGCGGG240830.13884340783514285No Hit
GGGGTT232700.13415629698641257No Hit
GGGAGG229490.13230566650370357No Hit
GGGGAG229330.13221342323976792No Hit
GGGTTG226570.13062222693687794No Hit
GGTGGT225250.1298612200094088No Hit
TGTGGG223140.1286447619662574No Hit
TGGGTG213800.12326006143401377No Hit
GGGGGA213580.12313322694610226No Hit
GTTGGG213510.1230928705181304No Hit
GGGTGT210000.12106928391554207No Hit
TTGGGG209790.12094821463162653No Hit
GTGGTG209520.1207925541237351No Hit
GGTGTG208540.12022756413212926No Hit
GTGTGG204630.11797336936970179No Hit
TGGTGG200180.11540785359149149No Hit
GGGTAG196210.11311906760508814No Hit
GTGGGT194960.11239841710559086No Hit
TGGGGT194840.11232923465763912No Hit
AGGTGG189800.1094235718436661No Hit
CGGTGG180450.1040331061074265No Hit
GGGCCG178560.10294348255218662No Hit
GGGGCT178270.10277629163630325No Hit
ATGGGG177750.10247650102851238No Hit
GGTTGT177580.10237849256058078No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)