FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483639

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483639
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10384212
Sequences flagged as poor quality0
Sequence length6
%GC56

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCAATT1101221.0604752676466929No Hit
GGGGGG352170.3391398403653546No Hit
CGGGGG207420.19974553678218432No Hit
GGGCGG205570.19796398609735624No Hit
TGGGGG189440.1824307901263957No Hit
ATCTCG182590.17583423759068093No Hit
GGGGGT161050.15509120961706097No Hit
GGCCGG160360.1544267393616386No Hit
GGCGGG157800.15196145841398462No Hit
GCGGGG157330.15150884824000127No Hit
GGTGGG156020.15024731775506894No Hit
GGGGGC153230.14756054672227417No Hit
GTGGGG152730.14707904653718548No Hit
GGGTGG150280.144719695630251No Hit
GGGGTG146320.14090621416434873No Hit
GCCGGG132220.1273279089448482No Hit
GGAGGG129390.12460261789724633No Hit
GAGGGG128740.12397666765663105No Hit
AGGGGG126750.12206029691997813No Hit
GGGGAG122500.11796754534672442No Hit
GGGGCG119830.11539633435835094No Hit
GGGCCG115290.1110243126777458No Hit
CCGGGG108710.1046877702419789No Hit
GCGCGG108330.10432183010131149No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)