FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483641

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483641
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11227372
Sequences flagged as poor quality0
Sequence length6
%GC60

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG1252411.1154970192490283No Hit
GTGGGG495850.4416438682177806No Hit
GGTGGG492990.4390965223206285No Hit
GGGGTG492650.4387936909901979No Hit
AGGGGG460450.4101137826376467No Hit
GGGGGT459540.4093032634885528No Hit
GGGTGG455020.40527738815459224No Hit
GAGGGG420210.37427280400079377No Hit
TGGGGG418300.37257160446808035No Hit
GGGGCG403870.35971908653244944No Hit
GCGGGG403760.3596211116902513No Hit
CGGGGG399100.3554705411025839No Hit
GGGCGG394950.3517742175105626No Hit
GGCGGG394710.35156045421849386No Hit
GGAGGG380040.3384941729907943No Hit
GGGGGA376210.33508286712153124No Hit
GGGGAG368760.3284472982635651No Hit
GGGAGG342820.3053430491124726No Hit
GGGGGC338530.3015220302667445No Hit
TGTGGG224650.20009134818014404No Hit
TTGGGG214080.19067685652528482No Hit
GTGGTG210390.18739024590972847No Hit
GTGTGG208970.18612547976498864No Hit
GGGTTG207630.18493196805093837No Hit
GTTGGG203820.18153847578934768No Hit
GTGGGT202660.18050528654434894No Hit
GGTGGT202190.18008666676404772No Hit
GGTTGG199820.17797575425486928No Hit
GGGGTT198740.17701381944056008No Hit
ATGGGG197350.17577577370732886No Hit
TGGGTG195080.17375392923651234No Hit
GTAGGG193290.17215961134983324No Hit
TAGGGG192740.17166973713884245No Hit
TGGTGG189700.16896206877263886No Hit
GGGGTA189290.1685968898153548No Hit
AGGTGG188950.16829405848492418No Hit
GGTGTG188470.16786653190078676No Hit
TCGGGG187010.16656613854070212No Hit
AGGGGT185820.1655062288841948No Hit
GGTAGG183360.16331515514049058No Hit
GTGGGA177810.1583718790114018No Hit
AGTGGG177000.15765042790066988No Hit
GGGTGT176580.15727634213954966No Hit
TGAGGG176470.1571783672973515No Hit
AAGGGG175780.15656379783265398No Hit
GGGATG174760.155655303841362No Hit
GTGGCG174450.1553791929224399No Hit
GAGGGT173030.15411442677770007No Hit
GGCGTG171380.15264480414472772No Hit
AGGGTG168690.150248873912791No Hit
GTGCGG167780.14943835476369716No Hit
GTCGGG165180.14712258576628617No Hit
GGGCTG164680.1466772455744764No Hit
GAGGTG164490.14650801630158866No Hit
GCTGGG163490.14561733591796905No Hit
GCGTGG163300.14544810664508132No Hit
GCCGGG163280.14543029303740893No Hit
GATGGG162690.14490479161107336No Hit
GTGAGG161680.14400520442361758No Hit
AGAGGG160650.14308780362848939No Hit
GGATGG160480.14293638796327404No Hit
TGCGGG160120.142615743025171No Hit
GGCTGG159700.14224165726405075No Hit
AGGCGG159590.1421436824218526No Hit
GGGGAT159440.14201008036430965No Hit
GGGCCG159360.1419388259336201No Hit
GGCGGT157620.14038904206612196No Hit
GGGTCG157230.14004167671651033No Hit
GGGTAG156970.13981009981676923No Hit
GGGGCT155970.13891941943314962No Hit
GCGGTG155680.13866112212189993No Hit
GGGTGA155200.13823359553776252No Hit
GCAGGG154300.1374319831925049No Hit
ACGGGG153740.1369332021776779No Hit
AGGGCG153680.13687976135466073No Hit
GGTCGG153490.136710532081773No Hit
CGGTGG153450.13667490486642822No Hit
GGGCGT152640.13595345375569634No Hit
GGTGAG152480.1358109448943172No Hit
GCGGGT151990.13537451150634358No Hit
AGGGAG151200.13467087400328412No Hit
GAGTGG151180.13465306039561173No Hit
GAGGAG150730.1342522542229829No Hit
GGCCGG150290.13386035485419026No Hit
CTGGGG149860.13347736228923385No Hit
TGGGGA148220.1320166464600977No Hit
GTGGAG146860.13080532113837504No Hit
CGGGTG146220.13023528569285847No Hit
GGGGTC146040.13007496322380696No Hit
GTGGGC145930.12997698838160882No Hit
GGTGGC145570.12965634344350574No Hit
GACGGG145400.1295049277782904No Hit
GAAGGG145220.12934460530923889No Hit
TGGGCG144970.12912193521333398No Hit
GGAAGG143700.12799077112613708No Hit
GGCAGG143170.12751871052281868No Hit
AGCGGG142150.1266102165315267No Hit
TGGGAG141530.12605799469368256No Hit
CCGGGG141440.12597783345915678No Hit
GGAGGT140910.1255057728558384No Hit
GGGAAG140900.1254968660520022No Hit
GCGCGG140090.12477541494127031No Hit
GGGGAA139370.12413412506506419No Hit
GGCGGA139080.12387582775381452No Hit
GGTGGA138890.12370659848092679No Hit
GGGGAC138740.12357299642338385No Hit
GGACGG138740.12357299642338385No Hit
TGGCGG138640.12348392838502188No Hit
GGAGTG138220.12310984262390166No Hit
TGGGGT138080.1229851473701949No Hit
GGGGCC136680.12173819483312746No Hit
TGGGGC136110.1212305070144643No Hit
GGGCAG135920.12106127774157657No Hit
GGGTGC134680.11995683406588827No Hit
GGCGGC132940.11840705019839015No Hit
AGGGGC132390.11791717598739937No Hit
CGTGGG131710.11731151332653802No Hit
GAGGGC129790.1156014069899884No Hit
GAGAGG129360.11521841442503197No Hit
AGGGGA129340.11520060081735958No Hit
CGGGCG129130.11501355793679946No Hit
CGGGGT128970.11487104907542031No Hit
GCGGGC128430.11439008166826573No Hit
GGGGCA127930.11394474147645593No Hit
GCGGGA127190.11328563799257742No Hit
GAGCGG125780.1120297786516738No Hit
CGAGGG125170.11148646361766584No Hit
GAGGCG123840.11030185870745175No Hit
CAGGGG123560.11005246820003826No Hit
GGTGCG122570.10917069462025486No Hit
GTGTTG122510.10911725379723768No Hit
CGCGGG122200.1088411428783156No Hit
GGGACG120520.10734479983383466No Hit
GGCGCG119880.10677476438831811No Hit
GGGCGA119420.10636505141185311No Hit
AGGAGG118960.1059553384353881No Hit
GCGGCG116650.1038978667492268No Hit
GCGGAG115640.102998279561771No Hit
GCGAGG115550.10291811832724525No Hit
GGGAGA115450.10282905028888328No Hit
GGCGAG115380.10276670266202989No Hit
CGGGGA113830.10138614806741951No Hit
GAGGGA112460.10016591594186065No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)