FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483643

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483643
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15381149
Sequences flagged as poor quality0
Sequence length6
%GC57

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG1176630.7649818618882113No Hit
GGGGGT537970.34975930601803545No Hit
TGGGGG526930.34258168879321044No Hit
GTGGGG491870.31978755293248895No Hit
GGGGTG468740.3047496646706953No Hit
GGGTGG464550.3020255508869981No Hit
AGGGGG462000.30036767734322056No Hit
CGGGGG446560.29032941557226966No Hit
GCGGGG432130.2809478017539522No Hit
GGTGGG415560.27017487445183713No Hit
GGGGGA408760.26575387833509706No Hit
GAGGGG406410.26422603408887074No Hit
GGGCGG404360.26289323378897117No Hit
GGCGGG394400.25641777477092254No Hit
GGGGGC386350.2511840955444876No Hit
GGGAGG369880.2404761828911481No Hit
GGGGAG365250.23746600465283835No Hit
GGGGCG358070.23279795287075108No Hit
GGAGGG348920.2268491125077847No Hit
GGGGTT262930.17094301602565584No Hit
TGGGTG254550.1654947884582615No Hit
TTGGGG249730.1623610823872781No Hit
TGGGGT249140.16197749595950212No Hit
TAGGGG247310.16078772788690884No Hit
GGGTTG246800.16045615317815334No Hit
TGTGGG244680.15907784262411084No Hit
GGGTGT236810.15396118976547202No Hit
GGTGGT234840.15268040118459292No Hit
AGGTGG231470.15048940752085557No Hit
GTGGTG227510.14791482742934223No Hit
GTGGGT225250.14644549636701393No Hit
TGGTGG220310.14323377271749985No Hit
GTGTGG217940.14169292554151838No Hit
AGGGGT214180.13924837474755625No Hit
GGTTGG211340.13740195872232952No Hit
GGGTAG209380.136127671606328No Hit
TCGGGG208290.13541901193467404No Hit
ATGGGG206610.13432676583524417No Hit
GTTGGG201620.1310825348613423No Hit
GGGGAT199860.12993827704289193No Hit
GGGGTA196010.12743521306503175No Hit
GTAGGG195340.1269996149182353No Hit
GGTGTG193240.12563430729394795No Hit
GGGCGT192770.12532873844470266No Hit
CTGGGG192280.12501016666570228No Hit
GAGGGT191190.12430150699404836No Hit
GGGGCT190780.12403494693406845No Hit
TGGCGG190470.12383340152286412No Hit
AGGGTG190290.12371637515506807No Hit
GTCGGG190000.12352783267361885No Hit
GGAGGT189410.12314424624584289No Hit
GGCGGT189100.12294270083463855No Hit
CGGGGT187830.12211701479518858No Hit
TGGGAG186950.12154488588596339No Hit
TGGGCG186280.12110928773916695No Hit
TGCGGG184780.12013406800753311No Hit
AAGGGG184460.11992602113145123No Hit
TGAGGG184010.11963345521196107No Hit
TGGGGA182850.11887928528616426No Hit
GGCTGG181150.11777403625697924No Hit
GAGGTG179800.11689633849850879No Hit
GGGCTG179370.11661677550877377No Hit
TGGAGG179190.11649974914097772No Hit
TGGGGC178360.1159601275561403No Hit
GGCGTG177090.11513444151669033No Hit
GGGAGT176380.11467283751038365No Hit
GGGTGA175040.11380164121679076No Hit
GGGGCA175000.11377563535728054No Hit
GCGGGT174840.11367161191923958No Hit
GGGATG173820.11300846250172857No Hit
CGGTGG172670.11226079404080931No Hit
GGGAAG171680.11161714901793097No Hit
CGTGGG171380.11142210507160422No Hit
GGATGG170590.11090848934627706No Hit
GGCCGG170570.11089548641652193No Hit
CGGGTG169980.11051189998874597No Hit
ACGGGG168300.10941965388931607No Hit
GAGTGG167990.10921810847811175No Hit
CAGGGG167920.10917259822396884No Hit
AGTGGG167850.10912708796982593No Hit
AGCGGG167830.1091140850400708No Hit
GCGTGG167590.10895804988300939No Hit
GGGGTC166700.10837941950890666No Hit
GGTAGG165580.10765125544262004No Hit
GGTCGG165560.10763825251286493No Hit
GAAGGG165380.10752122614506887No Hit
GTGCGG165360.10750822321531377No Hit
GTGAGG165100.10733918512849723No Hit
GTGGAG164310.10682556940317008No Hit
GGTGGA162980.10596087457445473No Hit
GGGCCG161890.10525221490280082No Hit
AGGGGA161870.1052392119730457No Hit
GGAAGG160710.10448504204724889No Hit
GCCGGG159920.10397142632192172No Hit
GGGGAA159050.1034057988775741No Hit
GCGGTG157410.10233955863765444No Hit
GCTGGG157100.10213801322645011No Hit
GATGGG156880.10199498099914384No Hit
GGGCAG156860.1019819780693887No Hit
GGGTCG156680.10186495170159265No Hit
GGCAGG155910.10136433890602062No Hit
TTGGGT155260.10094174368897929No Hit
TGGTGT155100.10083772025093833No Hit
GGAGTG155090.10083121878606079No Hit
GGCGGA154510.10045413382316236No Hit
AGGGGC154460.10042162649877458No Hit
GGTGAG154000.10012255911440687No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)