FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483645

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483645
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3833954
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG114820.2994819447494675No Hit
GGGTGG85590.22324211505928343No Hit
GGGGTG84270.2197991942522002No Hit
CAATTT81910.2136436691728696No Hit
GGGGGT80390.20967909369804644No Hit
GTGGGG77200.2013587017475953No Hit
GGTGGG75120.1959334932031005No Hit
GTTGTG65360.17047674541739416No Hit
TGGGGG65070.16972034614917134No Hit
GGAGGG60050.15662681398890022No Hit
GGGTTG59590.1554270082530985No Hit
GGGAGG58400.1523231629800462No Hit
GGTGTT57810.15078428171021352No Hit
GTGGTG56420.14715878176942132No Hit
GGTTGT55780.1454894868326537No Hit
GTGGTT54930.1432724544947592No Hit
GGTTGG54740.1427768825604063No Hit
GGGTGT54060.1410032566900907No Hit
GGTGTG53840.14042943655557683No Hit
TGGGTG53560.13969912002074097No Hit
AGGGGG52620.13724734308236353No Hit
GTTTGG52590.13716909488220255No Hit
GTTGGG51770.13503031074446903No Hit
GGGGGA51390.13403916687576323No Hit
GGGCCG50700.13223945827206066No Hit
GGTGGT50680.13218729280528665No Hit
GTTTGT49820.12994417773400516No Hit
GGGGCT48600.12676208426079186No Hit
GGCGGG48430.12631867779321296No Hit
GGGTAG48040.12530145119112018No Hit
TGGTTG47770.12459721738967133No Hit
GTGGCG47750.12454505192289736No Hit
GGGGGC47150.12298008791967771No Hit
GGGGAG47070.12277142605258175No Hit
TGGTGG46910.12235410231838985No Hit
ATGTGG46730.12188461311742395No Hit
TGTGGG46610.12157162031678002No Hit
GATTGG45400.11841560957695371No Hit
CGGGGG45160.11778962397566584No Hit
TGGGTT44810.11687672830712106No Hit
GGGCGG44770.11677239737357308No Hit
GCGGTG43530.1135381384335858No Hit
GGTTTT43530.1135381384335858No Hit
TTGGTG43380.11314689743278088No Hit
GGGGTC42860.11179059529665718No Hit
GGTAGG42480.11079945142795142No Hit
GTTGTT42160.10996480395956759No Hit
GCGGGG41850.10915623922457077No Hit
GACGGG41800.1090258255576358No Hit
GGTGGA41780.1089736600908618No Hit
GATGGG41610.1085302536232829No Hit
TGGGGT41370.10790426802199506No Hit
GTGTGG41270.10764344068812512No Hit
CGTGGT41100.10720003422054622No Hit
ATGGGG40270.10503516734942568No Hit
GGTGTA40200.10485258821571672No Hit
AGTGGG40140.10469609181539476No Hit
GTTGAG39930.10414835441426788No Hit
GTAGGG39840.10391360981378493No Hit
GGTCGG39810.10383536161362396No Hit
TGGCGG39720.103600617013141No Hit
AGGTGG39230.1023225630771783No Hit
GGCTGG38940.10156616380895545No Hit
TGGGAG38880.10140966740863348No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)