FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483647

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483647
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7807042
Sequences flagged as poor quality0
Sequence length6
%GC60

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG765240.9801919856457798No Hit
GGGGGT355760.45569115677871336No Hit
TGGGGG325360.41675195291635425No Hit
GGTGGG319650.409438043243523No Hit
GGGTGG319400.4091178195275496No Hit
GTGGGG308200.39477179705194365No Hit
GGGGTG307010.39324753216391045No Hit
GGGCGG268570.34400993359584847No Hit
GGAGGG259570.3324818798208079No Hit
GGCGGG258820.3315212086728879No Hit
GCGGGG256210.32817807307812613No Hit
CGGGGG256190.3281524551808483No Hit
AGGGGG252920.32396392897591686No Hit
GGGGGC248450.3182383289343134No Hit
GAGGGG242630.3107835208264539No Hit
GGGGCG238930.3060442098300483No Hit
GGGAGG238790.30586488454910327No Hit
GGGGGA236730.3032262411294828No Hit
GGGGAG224760.28789392960867893No Hit
GGGTTG162450.20808137063948162No Hit
GGTTGG161230.2065186789055317No Hit
GTTGGG159130.2038287996913556No Hit
TGTGGG155060.19861555759530947No Hit
GGGTGT154580.19800072806064065No Hit
TTGGGG148590.19032816782591921No Hit
GGGGTT147100.18841963447871807No Hit
TGGTGG140970.18056774896305158No Hit
GGTGGT140830.1803884236821065No Hit
TGGGGT139140.17822371136212667No Hit
AGTGGG135730.17385585987625019No Hit
CCGGGG132170.1692958741607897No Hit
GGCGGT131730.16873228042067662No Hit
GGGTCG129250.165555661158221No Hit
GTGGGT129070.1653251000827202No Hit
GTGTGG128130.1641210589106604No Hit
GGGGTA127730.16360870096510305No Hit
GGTGTG127660.1635190383246305No Hit
TGGGTG127550.16337813988960223No Hit
GGCTGG127080.16277611930357233No Hit
CGTGGG125520.16077792331589863No Hit
GTGGTG124140.15901028840372575No Hit
GGGGCT122150.1564613076245779No Hit
AGGTGG120290.1540788431777362No Hit
AGGGGT119800.15345120469442844No Hit
GATGGG118890.15228559036828546No Hit
GCTGGG116880.14971099169185975No Hit
GGGTAG116200.14883998318441222No Hit
GTGGGA115960.14853256841707782No Hit
GTCGGG115310.1476999867555471No Hit
GGAGGT114860.14712358406679507No Hit
GGTAGG114650.14685459614537746No Hit
CGGGGT114620.14681616929946067No Hit
TCGGGG114190.14626538450798648No Hit
GTAGGG113370.14521505071959392No Hit
TAGGGG112560.14417752587984028No Hit
GGTCGG111920.14335775316694852No Hit
GGATGG111870.14329370842375383No Hit
GGCCGG111130.14234584622447274No Hit
GGCAGG110500.1415388824602199No Hit
GGCGTG110480.14151326456294203No Hit
TGAGGG110220.14118023189832973No Hit
GGGGAT110070.14098809766874573No Hit
GGGCGT109870.14073191869596707No Hit
GCCGGG108780.13933574329432324No Hit
ATGGGG108250.13865686901645974No Hit
GCGGGT107900.13820855581409705No Hit
TGGGGA107710.1379651857899573No Hit
TGGAGG107260.13738878310120528No Hit
CTGGGG106680.13664586408014712No Hit
CGGGTG106600.13654339249103564No Hit
GGGATG105860.13559553029175456No Hit
TGCGGG105760.1354674408053652No Hit
GGGCCG104920.13439148911969476No Hit
GGGCTG104640.1340328385578046No Hit
GCGGTG104420.13375104168774804No Hit
GAGGGT104150.13340520007449683No Hit
GGTGGC102650.13148385777865676No Hit
GAGTGG102480.1312661056517949No Hit
GAGGTG102230.13094588193582152No Hit
GGAGTG102050.1307153208603207No Hit
AGGGTG101690.1302541987093191No Hit
GACGGG101600.1301389181715687No Hit
GCGTGG101370.12984431235287322No Hit
GTGGGC101030.12940880809914945No Hit
AGGGGA99270.1271544331386971No Hit
GGGTGA99040.12685982732000162No Hit
GCAGGG98840.12660364834722293No Hit
GGGGCA98430.12607848145302664No Hit
GGGTGC98000.12552769666155247No Hit
GGTGCG97310.12464387920546605No Hit
CGCGGG97240.1245542165649935No Hit
TGGGCG96950.12418275705446441No Hit
GGGAGT96890.12410590336263082No Hit
CAGGGG96830.12402904967079721No Hit
GAGCGG96760.12393938703032467No Hit
CGGGGA96490.12359354541707346No Hit
GGCGCG95770.1226713011150702No Hit
GGGACG95540.12237669529637472No Hit
GGGCAG95330.12210770737495712No Hit
CGGTGG95220.12196680893992884No Hit
ACGGGG95030.1217234389157891No Hit
GTGGCG94730.12133917045662108No Hit
GTGCGG94640.12122388991887068No Hit
GTGAGG93900.12027602771958958No Hit
GTGGAG93330.11954591764717035No Hit
CGGGGC92720.11876457178019537No Hit
CGAGGG91420.11709940845713396No Hit
AAGGGG90820.11633087153879791No Hit
TGGCGG89590.11475537085620904No Hit
GGGGTC89400.1145120008320693No Hit
GGTGGA88490.11334638650592631No Hit
GGAGGC88450.11329515071137057No Hit
GGAAGG87740.11238571535800627No Hit
GGGCGA87200.11169403213150385No Hit
AGGGGC87060.11151470685055877No Hit
AGCGGG87030.11147628000464195No Hit
GGCGGA86560.11087425941861206No Hit
GCGCGG85160.10908100660916131No Hit
GGACGG85140.10905538871188346No Hit
GGGGAA84900.10874797394454905No Hit
GGCGAG83870.10742865223473885No Hit
GAGAGG82770.1060196678844561No Hit
GGGGCC82450.10560978152801023No Hit
GCGAGG81750.10471315512328484No Hit
GGGAGA81370.10422641507500537No Hit
GCGGCG81270.10409832558861602No Hit
AGAGGG80910.10363720343761441No Hit
TGGGGC79920.10236911752235994No Hit
GGAGGA79710.10210012960094232No Hit
GCGGGA79580.10193361326863619No Hit
TGTTGG79250.10151091796355137No Hit
GAGGGC78920.10108822265846656No Hit
GGGAGC78530.10058867366154811No Hit
GTGGTT78170.1001275515105465No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)