FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483649

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483649
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13720765
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG521160.3798330486674759No Hit
TGGGGG312920.22806308540376574No Hit
GTGGGG288470.21024337928679634No Hit
GGGGTG277380.20216073957975375No Hit
GGGGGT265970.193844876725168No Hit
AGGGGG256370.18684818229887326No Hit
GGTGGG256100.18665140026813376No Hit
GGGTGG252520.18404221630499465No Hit
GGGCGG217030.15817631159778628No Hit
GGGGCG212570.1549257639789035No Hit
GGGGAG210080.1531109963620833No Hit
GGGAGG208840.15220725666535356No Hit
GGGGGA208260.1517845397104316No Hit
GGAGGG206690.150640288642798No Hit
TGGTGG198810.1448971686345477No Hit
CGGGGG197950.14427038142552545No Hit
GCGGGG195340.14236815512837658No Hit
GGGTTG191300.1394237128906442No Hit
GAGGGG191130.13929981309351191No Hit
TGGGGT190560.13888438436195066No Hit
TTGGGG189830.13835234405661784No Hit
GGGGGC186750.13610757126151493No Hit
GTTGGG184620.1345551796856808No Hit
TGGGTG184020.13411788628403737No Hit
TGTGGG179980.131173444046305No Hit
GTGGTG179000.1304591981569541No Hit
GGCGGG176560.1286808716569375No Hit
GGTTGG172230.12552507094174414No Hit
GTGGGT169410.12346979195402005No Hit
GTGTGG164020.11954143956258997No Hit
GGTGGT162140.11817125357077393No Hit
GGGTGT161050.11737683722445505No Hit
GGGGTT159760.1164366564109217No Hit
AGGTGG154880.11288000341088854No Hit
GGGTAG150890.10997200228995978No Hit
TGGGCG150540.10971691447233445No Hit
TGTTGG150020.10933792685757682No Hit
GGCTGG144660.10543143913622892No Hit
TGGGGC144510.10532211578581807No Hit
GGTGTG144410.10524923355221083No Hit
GGGGTA144340.10519821598868576No Hit
GGATGG143830.10482651659728885No Hit
ATGGGG142940.10417786471818445No Hit
GTAGGG139160.10142291628783089No Hit
TAGGGG138520.10095646999274457No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)