FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483651

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483651
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11957365
Sequences flagged as poor quality0
Sequence length6
%GC56

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG547280.45769281108337834No Hit
GTGGGG300650.2514349942483147No Hit
GGGGTG291860.24408387633897602No Hit
GGGGGT280850.23487616209758588No Hit
TGGGGG274540.22959907973035865No Hit
GGTGGG271150.2267640069530369No Hit
GGGTGG235200.196698854638961No Hit
GGCGGG220530.18443026536364826No Hit
AGGGGG219500.18356887156994872No Hit
GAGGGG211100.17654391247570014No Hit
GGGGGA209230.1749800227725757No Hit
GGGGCG208910.17471240528327103No Hit
GCGGGG205550.17190242164557157No Hit
GGAGGG202110.16902553363554595No Hit
CGGGGG201880.16883318356510818No Hit
GGGCGG201340.1683815790519065No Hit
GGGAGG201340.1683815790519065No Hit
GGGGGC193460.16179149837777804No Hit
GGGGAG190440.15926585832246484No Hit
GTGGTG188230.15741762503695422No Hit
GTTGGG179730.1503090354772979No Hit
GGGTTG178520.14929710684586447No Hit
GTGGGT171880.14374404394279172No Hit
TGGGTG169400.14167000840068025No Hit
GGTTGG156360.1307645957115134No Hit
GGGGTT154680.12935960389266363No Hit
GTGTGG154510.12921743210147052No Hit
GGTGTG153030.12797970121343624No Hit
GGTGGT152940.12790443379456928No Hit
TGTGGG147800.1236058278726124No Hit
TGGTGG147160.12307059289400299No Hit
TTGGGG143200.11975882646385722No Hit
GGGTGT141020.11793568231796889No Hit
GCTGGG138690.11598709247396896No Hit
GGGGTC138190.11556894014693037No Hit
GTCGGG136530.11418067442116218No Hit
GGAGTG135430.11326073930167724No Hit
GTAGGG135100.11298475876583176No Hit
GGGGTA131230.10974825975455295No Hit
GGGTAG131080.10962281405644136No Hit
GTGCGG128860.10776621772438995No Hit
GAGGTG127210.10638631504516255No Hit
TGGGGT125640.10507331673826131No Hit
TGAGGG125430.1048976927609051No Hit
GGGATG125120.10463843831814115No Hit
GGGTCG123560.1033338030577807No Hit
GGGCGT122470.10242223098483655No Hit
GGTCGG122190.10218806568169493No Hit
TGGCGG121100.10127649360875077No Hit
GGTGTT120210.10053218246662203No Hit
GTGGCG119770.10016420841882806No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)