FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483653

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483653
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18887035
Sequences flagged as poor quality0
Sequence length6
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG1031130.5459459359290646No Hit
TGGGGG541990.2869640470301453No Hit
GGGGGT539380.28558214669480947No Hit
GTGGGG491840.2604114409699564No Hit
GGGTGG481090.2547197058723087No Hit
GGGGTG470490.2491073903341631No Hit
AGGGGG459790.2434421284230161No Hit
GGTGGG448880.23766567912856623No Hit
CGGGGG433070.22929485755704906No Hit
GGGGGC425730.2254085937787482No Hit
GAGGGG420380.22257596282317474No Hit
GGGGGA419830.22228475777166717No Hit
GCGGGG399020.2112666175500813No Hit
GGGAGG385590.2041559196559968No Hit
GGGGAG383510.20305463509756824No Hit
GGCGGG376930.19957076375407787No Hit
GGAGGG376880.1995442905675772No Hit
GGGGCG375880.19901482683756344No Hit
GGGCGG366660.1941331712468368No Hit
TTGGGG305390.1616929285088951No Hit
GGGGTT276010.14613728412109153No Hit
TGTGGG275920.1460896323853903No Hit
GGGTTG269490.14268518060140198No Hit
GGGTGT264030.13979430863552697No Hit
TGGTGG261160.13827474773038753No Hit
TCGGGG257730.1364586871364404No Hit
GTTGGG250880.1328318605858463No Hit
TGGGTG250850.1328159766739459No Hit
ATGGGG249540.13212237918762793No Hit
GTGGTG248760.1317093974782172No Hit
GTGTGG247290.130931085795097No Hit
TGGGGT244360.12937975706615676No Hit
GGTTGG240670.12742603590240606No Hit
TAGGGG240280.12721954504770072No Hit
GTGGGT236290.1251069847649459No Hit
GGTGTG234340.1240745304914191No Hit
GTCGGG233620.12369331660580922No Hit
GGGTCG229980.12176606862855921No Hit
AGGGGT229590.12155957777385386No Hit
GGGGTA228220.12083421246373505No Hit
AGGTGG226800.12008237396711555No Hit
CTGGGG225800.1195529102371018No Hit
GGTGGT225030.11914522316499124No Hit
TGGCGG223610.11839338466837171No Hit
GTAGGG219460.1161961101888147No Hit
AGTGGG219430.1161802262769143No Hit
CGGGGT219260.11609021744281196No Hit
GAGGTG215760.11423709438776387No Hit
GGGGTC215730.11422121047586348No Hit
GGGATG214640.1136440950101485No Hit
GAGGGT212280.11239456060731608No Hit
GCGGGT211950.11221983757641153No Hit
CAGGGG211420.11193922179950427No Hit
GGATGG209410.11087499970217667No Hit
GGGGAT208650.11047260726736621No Hit
GCGTGG206320.1092389567764342No Hit
TGGGGA206100.10912247475583119No Hit
GATGGG204440.10824356496400837No Hit
GTGGGA204380.10821179714020757No Hit
TGCGGG204070.1080476633839033No Hit
GGGGAA203350.10766644949829342No Hit
GGGCGT202820.10738583372138612No Hit
CGGGTG201610.1067451826080695No Hit
GTGGCG200720.10627395988835728No Hit
AGGGTG199660.10571272833454272No Hit
GGGGCT198650.10517796996722885No Hit
GGGTAG198550.10512502359422747No Hit
GGGAGT198460.10507737185852624No Hit
GGTAGG198040.10485499709192046No Hit
AAGGGG196960.10428317626350564No Hit
TGGGAG195050.10327190053917938No Hit
TGGGCG194400.10292774911467045No Hit
GGGGCA194020.10272655289726525No Hit
GGTCGG192620.10198530367524601No Hit
TGAGGG192320.10182646455624189No Hit
GTGCGG191840.1015723219658353No Hit
GGAGGT190830.10103756359852141No Hit
TGGAGG190500.10086284056761688No Hit
ACGGGG189500.10033337683760316No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)