FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483655

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483655
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16518353
Sequences flagged as poor quality0
Sequence length6
%GC56

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG900690.5452662259972286No Hit
GGGGGT393510.23822592966744321No Hit
TGGGGG389740.2359436198027733No Hit
GGTGGG384560.23280771394097222No Hit
GGGTGG384350.23268058262225053No Hit
GGGGTG382480.2315485084983957No Hit
GTGGGG370980.22458655533030442No Hit
CGGGGG350870.2124122180946248No Hit
GCGGGG349320.21147386788501252No Hit
AGGGGG347640.21045681733523916No Hit
GAGGGG347370.21029336278259705No Hit
GGGGCG338190.20473590799276417No Hit
GGGGGA334920.20275629174409823No Hit
GGGCGG333080.20164237923720363No Hit
GGGGAG312710.18931064132120193No Hit
GGCGGG312700.18930458744888184No Hit
GGAGGG312060.1889171396203968No Hit
GGGGGC306020.18526060073906886No Hit
GGGAGG303050.18346260066000528No Hit
GCCGTC300860.18213680262190787No Hit
GGGTGT209900.12707077999846594No Hit
TTGGGG193240.11698502871321372No Hit
GGTGGT191620.11600430139736087No Hit
GGGGTT191350.11584084684471872No Hit
GGTGTG190790.11550182999479429No Hit
GGGTTG190220.11515675927254974No Hit
GGTTGG186380.11283207230163927No Hit
TGGTGG184920.11194820694290769No Hit
GTGTGG184850.11190582983666712No Hit
TGTGGG184450.11166367494386395No Hit
GTGGGT183400.11102801835025562No Hit
TGGGTG182090.11023496107632523No Hit
TGGGGT181310.10976275903535904No Hit
GTTGGG179170.10846723035886205No Hit
AGGTGG178270.1079223818500549No Hit
GGTCGG178150.10784973538221394No Hit
GTGGTG176990.10714748619308474No Hit
TAGGGG175580.10629389019595355No Hit
GGGTCG175040.10596698109066928No Hit
ATGGGG174850.10585195751658776No Hit
GGGGTA174790.10581563428266728No Hit
AGTGGG171750.10397525709736316No Hit
GGGGCT170520.10323063080199339No Hit
AAGGGG169790.1027886981226276No Hit
GGGTAG168810.10219541863525983No Hit
GGGTGA167820.10159608527557196No Hit
AGGGTG166090.10054876536419824No Hit
GTGGAG165870.1004155801731565No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)