FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483657

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483657
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18557846
Sequences flagged as poor quality0
Sequence length6
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG429700.2315462688934912No Hit
GGGGTG300470.16190995442035674No Hit
GTGGGG297820.1604819869719794No Hit
GGGTGG297300.1602017820387129No Hit
GGGGGT294090.15847205543143317No Hit
TGGGGG282540.15224827277907146No Hit
GGTGGG269660.1453078121243166No Hit
GGGGTT233070.12559108422389106No Hit
GGGTTG231430.12470736097281981No Hit
TTGGGG230630.12427627646010211No Hit
GTGGTG219340.11819259627437366No Hit
TGGGTG219030.11802555102569555No Hit
AGGGGG214620.11564919764933926No Hit
GGTTGG213880.1152504444750754No Hit
TGTGGG213430.11500795943667169No Hit
GGGTGT210770.11357460343188536No Hit
TGGTGG208210.11219513299118875No Hit
GTTGGG207590.11186104249383254No Hit
TGGGGT206840.11145690076315969No Hit
GTGTGG203890.1098672766225132No Hit
GGGCGG203590.10970561993024405No Hit
GGGGGA201410.10853091463308834No Hit
GGTGGT200670.10813216145882448No Hit
GGAGGG199100.10728615810261599No Hit
GTGGGT197910.10664491988994843No Hit
GGTGTG197840.10660719999508562No Hit
GGGTTT197240.10628388661054736No Hit
CGGGGG195040.1050984042005737No Hit
GGCGGG193350.10418773816745758No Hit
GGGAGG192720.1038482591136924No Hit
GGTTTG190530.1026681652601277No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)