FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483661

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483661
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2927127
Sequences flagged as poor quality0
Sequence length6
%GC59

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG163710.5592856066716614No Hit
GGGGGT78050.2666437090020351No Hit
GGGGTG76270.26056266092998354No Hit
AGGGGG75940.2594352756132549No Hit
GGGCGG75670.2585128694450224No Hit
CGGGGG74470.2544132864751No Hit
GCGGGG72820.24877635989145672No Hit
GGGTGG71510.2443009818159581No Hit
GGGGCG70710.24156792650267653No Hit
GGCGGG70470.24074800990869205No Hit
GGTGGG70190.23979144054904347No Hit
TGGGGG68940.23552104162204102No Hit
GGGGGA68710.23473528821947254No Hit
GGGAGG68420.23374455566840796No Hit
GGGGGC68330.23343708694566379No Hit
GAGGGG67200.22957664631565355No Hit
GTGGGG66070.22571620568564327No Hit
GGAGGG62680.21413488379561255No Hit
GGGGAG51780.1768970051521509No Hit
CGGTGG46300.158175576256172No Hit
ACGGGG43980.1502497158476554No Hit
TGGGTG41790.14276797692754703No Hit
GGCCGG41510.14181140756789848No Hit
CAGGGG41320.1411623069309941No Hit
CGAGGG39320.13432966864779014No Hit
TGGGGT38490.13149412376026048No Hit
CGGGGT38030.12992261695512358No Hit
CCGGGG37320.12749703036458615No Hit
TCGGGG37080.12667711377060167No Hit
CGGCGG36780.1256522180281211No Hit
TGGTGG36380.1242856903714803No Hit
GCCGGG35540.12141598229253461No Hit
CGCGGG35380.12086937122987831No Hit
GGGTGT35030.11967365953031762No Hit
AGGGGT34920.1192978644247414No Hit
GGGCTG34800.11888790612774916No Hit
TGCGGG34770.1187854165535011No Hit
GGGCAG34690.11851211102217295No Hit
GTGTGG34500.11786301038526856No Hit
GGTTGG34030.11625734038871562No Hit
GCAGGG33880.11574489251747534No Hit
GGGGAA33870.1157107293260593No Hit
GTCGGG33660.1149933023063229No Hit
TAGGGG33580.11471999677499473No Hit
GGTGTG33550.11461750720074668No Hit
GGTCGG33310.1137975906067622No Hit
AGGGCG33220.11349012188401801No Hit
GTGGGT33160.1132851427355219No Hit
ATGGGG32970.11263604209861752No Hit
GACGGG32770.11195277827029712No Hit
AGGGTG32770.11195277827029712No Hit
CGGGCG32720.11178196231321702No Hit
TGGCGG32290.11031294508232817No Hit
GTGGTG31960.10918555976559952No Hit
GCGCGG31910.1090147438085194No Hit
CTGGGG31830.10874143827719125No Hit
TGGGCG31690.10826315359736696No Hit
TGTGGG31660.10816066402311891No Hit
GGTAGG31390.10723825785488637No Hit
AAGGGG31380.10720409466347036No Hit
GGGTTG31230.10669164679223005No Hit
AGGCGG31210.10662332040939802No Hit
GCGGGC30910.10559842466691743No Hit
AGGGGC30710.10491516083859702No Hit
GGGACG30520.10426606020169264No Hit
GCTGGG30490.10416357062744461No Hit
GAGGGT30290.10348030679912419No Hit
GGGGCC30260.10337781722487614No Hit
GGGCGT30120.10289953254505185No Hit
GAGGGC30070.10272871658797175No Hit
CGGGGA30000.10248957424805961No Hit
CGTGGG29980.10242124786522758No Hit
GGCGCG29830.10190879999398728No Hit
GTGAGG29810.10184047361115525No Hit
CGGGAG29660.10132802573991494No Hit
GGTGGT29590.1010888834000028No Hit
AGGTGG29560.10098639382575474No Hit
GGACGG29520.10084974106009068No Hit
TGGGGC29500.10078141467725861No Hit
GTAGGG29480.10071308829442659No Hit
GTGGCG29320.10016647723177026No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)