FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483665

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483665
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18012988
Sequences flagged as poor quality0
Sequence length6
%GC57

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG1046060.5807254187922626No Hit
GTGGGG551150.30597366744484594No Hit
TGGGGG546830.3035753979295384No Hit
GGGGGT513820.28524973202669096No Hit
GGGTGG506290.2810694150243147No Hit
GGGGTG497920.2764227678384064No Hit
AGGGGG476760.26467568845324274No Hit
GGTGGG463100.2570922714210435No Hit
CGGGGG441810.2452730218884285No Hit
GGCGGG403870.22421044193223247No Hit
GAGGGG390970.2170489426851336No Hit
GGGGGA384650.21354036320903563No Hit
GGGCGG379190.2105092170160775No Hit
GCGGGG375690.2085661745846941No Hit
GGGGCG371520.2062511783164459No Hit
GGGGAG369510.20513531680585143No Hit
GGGGGC368630.2046467804231036No Hit
GGAGGG359200.19941166895797632No Hit
GGGAGG356250.1977739617658103No Hit
TTGGGG313600.1740966018519526No Hit
TGGGTG297250.16501981792249015No Hit
GTGTGG296510.16460900323699765No Hit
GGGTGT291520.1618387798848253No Hit
GTGGTG273880.152045846030653No Hit
TGGGGT273170.15165168599457238No Hit
TGGTGG265200.14722710080082219No Hit
GGGTTG264560.14687180161336919No Hit
GGGGTT257020.14268593306118896No Hit
GTGGGT256820.14257490206510992No Hit
GTTGGG256600.14245276796942297No Hit
TGTGGG251650.1397047508164664No Hit
GGTTGG251100.13939941557724903No Hit
GGTGTG250750.1392051113341107No Hit
TAGGGG247700.13751188864390515No Hit
ATGGGG242790.13478607769016446No Hit
TCGGGG239520.13297072090427195No Hit
AGGGGT238720.13252659691995575No Hit
TGAGGG233580.12967310032072413No Hit
AGGTGG231080.128285212869736No Hit
GAGGGT226880.1259535619520759No Hit
CGGTGG226480.1257314999599178No Hit
CTGGGG225930.12542616472070042No Hit
AGTGGG224700.12474332409481426No Hit
GGGTCG224630.12470446324618657No Hit
TGCGGG224020.12436581870814549No Hit
GGTGGT223550.12410489586735972No Hit
GTCGGG220100.12218961118499608No Hit
GTAGGG219860.12205637398970122No Hit
GGGGAT218910.12152897675832572No Hit
GGGTAG218750.12144015196146248No Hit
CGGGGT217950.12099602797714627No Hit
GCGTGG217190.12057411019204588No Hit
GGGGCT214750.11921953203988145No Hit
TGGGGC208660.11583863820927433No Hit
GTGCGG206090.11441188990965852No Hit
AGGGTG203740.11310727570572968No Hit
GGATGG203630.1130462086578862No Hit
GGTAGG203040.11271866721945299No Hit
TGGGCG202140.11221902773709724No Hit
TGGCGG202130.11221347618729331No Hit
GTGAGG201030.11160280570885851No Hit
GTGGCG199400.11069790309081425No Hit
TGGGGA198500.11019826360845852No Hit
GGTCGG197790.10980410357237788No Hit
GGCGTG196310.10898247420139291No Hit
GGGATG195970.10879372150805852No Hit
AAGGGG195320.10843287077080159No Hit
GGCGGT195300.10842176767119369No Hit
GGGGTA195130.10832739132452651No Hit
GGCTGG194720.10809977778256444No Hit
GTGGAG194570.10801650453550517No Hit
CGTGGG192450.10683957597706721No Hit
ACGGGG192370.1067951635786356No Hit
GCGGTG190920.10599018885706246No Hit
GGGTGA188930.1048854304460759No Hit
GAGTGG188100.10442465181234786No Hit
GCGGGT185150.10278694462018184No Hit
TGGGAG183540.10189314510174548No Hit
GGGCTG183000.10159336141233205No Hit
GTGGGA182580.10136019632056602No Hit
GGGGCA182040.10106041263115259No Hit
CGGGTG181860.10096048473468143No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)