FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483667

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483667
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5463947
Sequences flagged as poor quality0
Sequence length6
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG131440.2405587023446604No Hit
TGGGGG105610.19328518376916906No Hit
GGGGGT103290.18903916893776607No Hit
GGGGTG88510.1619891261756382No Hit
GGGTGG85880.15717575591417707No Hit
GTGGGG77120.1411433895680174No Hit
GGGCGG76360.13975245367497158No Hit
GGGTTG73550.13460965122831536No Hit
AGGGGG71720.13126042401216556No Hit
GGTGGT71280.1304551453372443No Hit
GGGGGC70710.12941194341745996No Hit
GGGTGT70090.12827723255734363No Hit
GGTGGG69630.12743535030628958No Hit
GCGGGG67920.12430574454693648No Hit
TGGTGG67560.12364688017654636No Hit
TGGGTT66970.12256707468062923No Hit
GGTTGT64970.11890671706735077No Hit
GGGTTT64660.1183393616372926No Hit
GGGGTT63810.11678370965164926No Hit
TTGGGT62900.11511824693760755No Hit
GGGGAG62610.11458749508368218No Hit
GGTTTG62040.11354429316389782No Hit
GTGTGG60020.10984733197448658No Hit
TGGGGT59120.10820017104851128No Hit
GGTTGG59050.10807205853204652No Hit
GTGGGT59010.10799885137978095No Hit
GGCGGG58850.10770602277071868No Hit
GGGGTA58160.1064431993941376No Hit
GGGGGA57390.1050339617130254No Hit
GGTTTT57120.1045398134352328No Hit
TAGGGG56850.10404566515744022No Hit
GGCAGG56620.1036247240319132No Hit
TTTTTT55830.1021788827746682No Hit
GGGAGG55600.10175794164914119No Hit
GAGGGG54910.10049511827256012No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)