FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483669

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483669
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12666123
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG346760.2737696452181934No Hit
GGTGGG236890.18702644842466792No Hit
GGGTGG232620.18365525109775108No Hit
GGGGGT222890.1759733424347766No Hit
GGGGTG216100.17061258602967933No Hit
GGGGCG188020.1484432134442402No Hit
TGGGGG180780.14272717863232498No Hit
GTGGGG173210.1367506063220766No Hit
AGGGGG169960.13418470671728042No Hit
GGGCGG167390.13215567226056465No Hit
GGCGGG166550.13149248590117119No Hit
GGTTGG165360.1305529718920304No Hit
GGGGGA163600.12916343856758694No Hit
GGGTTG159090.12560275942370053No Hit
GCGGGG157140.12406321966082282No Hit
GTTGGG156270.12337634807430814No Hit
GGTGGT155030.12239735868663204No Hit
GGGTAG151320.11946828559931084No Hit
GAGGGG150420.11875772878567499No Hit
GGAGGG148490.1172339791742114No Hit
GGTGTG147860.11673658940466629No Hit
GGGGGC146570.11571812463845488No Hit
GTGTGG142270.11232324208441684No Hit
GGGGTT141870.11200743905613421No Hit
GGGTGT141630.11181795723916466No Hit
CGGGGG138590.10941785422421683No Hit
TGTGGG138310.109196792104419No Hit
TGGTGG132020.10423078948467498No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)