FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483671

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483671
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12864803
Sequences flagged as poor quality0
Sequence length6
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCTCG341600.2655306886549293No Hit
GGGGGG192000.14924441516904688No Hit
GCAATT170330.13240000643616542No Hit
GTGGGG166740.12960944679836917No Hit
TGGGGG158650.1233209711800484No Hit
GGTGGG143860.11182448732405775No Hit
GGGTGG142120.11047195981158825No Hit
GGGGGT141300.10983456178847045No Hit
GGCGGG130140.10115973015676961No Hit
TGTGGG129760.10086435058508085No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)