FastQCFastQC Report
Wed 8 May 2024
EGAF00005483673

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483673
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4416200
Total Bases26.4 Mbp
Sequences flagged as poor quality0
Sequence length6
%GC56

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG297430.6734975771024863No Hit
GGGGGT156550.35449028576604324No Hit
TGGGGG140580.3183279742765273No Hit
GTGGGG137480.31130836465739775No Hit
GGGGTG125270.2836601603188261No Hit
GGGTGG124820.2826411847289525No Hit
GGGGCG114040.25823105837597937No Hit
AGGGGG113460.2569177120601422No Hit
CGGGGG112930.255717585254291No Hit
GGGGGA105290.2384176441284362No Hit
GGCGGG105150.23810062950047553No Hit
GGGCGG104770.23724016122458222No Hit
GGTGGG103270.23384357592500338No Hit
GCGGGG99180.22458222000815178No Hit
GGGGAG99060.2243104931841855No Hit
GAGGGG98170.22229518590643538No Hit
GGGAGG95380.21597753724921878No Hit
GGAGGG95200.21556994701326931No Hit
GGGGGC95170.21550201530727778No Hit
GCAATT87120.19727367419953806No Hit
TGGGGT77540.175580816086228No Hit
GGGGTT74220.1680630406231602No Hit
GGGTGT73390.16618359675739325No Hit
GTGTGG71560.16203976269190706No Hit
GTGGGT71320.16149630904397444No Hit
TTGGGG69450.15726189937049953No Hit
GGGTTG67660.15320864091300213No Hit
GTGGTG66640.15089896290928853No Hit
TGGTGG64430.14589466056790906No Hit
GGTGGT64170.14530591911598206No Hit
ATGGGG64090.14512476790000453No Hit
TGGGTG63580.14396992889814772No Hit
AGGGGT63190.14308681672025725No Hit
GGGGCT63040.14274715819029934No Hit
CGGGGT61970.1403242606765998No Hit
CTGGGG61190.1385580363208188No Hit
CGGTGG59630.13502558760925684No Hit
AGGTGG59120.13387074860740003No Hit
GGGGTA58490.13244418278157694No Hit
GTGGAG58090.13153842670168922No Hit
TAGGGG57910.13113083646573978No Hit
GGGGAT57560.13033829989583806No Hit
GTTGGG57540.13029301209184366No Hit
GGGTAG57480.13015714867986053No Hit
CGGGTG57310.12977220234590825No Hit
GTGGCG56420.12775689506815813No Hit
GTCGGG54850.12420180245459897No Hit
GGGTCG54200.12272994882478148No Hit
AAGGGG53930.12211856347085728No Hit
TGTGGG53410.1209410805670033No Hit
GTAGGG53060.12014854399710158No Hit
GGTTGG52690.11931071962320548No Hit
TGAGGG52490.11885784158326163No Hit
GGGCGT51600.11684253430551152No Hit
GGATGG51210.11595942212762103No Hit
AGGGTG51130.11577827091164349No Hit
GCGGGT50890.11523481726371089No Hit
GGCGGT50680.11475929532176986No Hit
GGTGTG50380.11407997826185408No Hit
GGAGGT50080.11340066120193833No Hit
TGGCGG49940.11308364657397763No Hit
TGCGGG49700.11254019292604502No Hit
TCGGGG49660.11244961731805625No Hit
GGGATG49580.1122684661020787No Hit
TGGGAG49550.11220053439608714No Hit
TGGGGA49240.11149857343417417No Hit
GTGCGG49190.11138535392418822No Hit
AGTGGG48650.11016258321633984No Hit
GCGTGG48540.10991350029437073No Hit
GAGGGT48030.10875866129251392No Hit
GTGGGA47970.10862279788053078No Hit
GTGAGG47880.10841900276255606No Hit
GGGGCA47420.10737738327068522No Hit
CCGGGG46700.10574702232688737No Hit
GGCGTG46480.10524885648294914No Hit
GGGAGT46470.10522621258095195No Hit
GTGTGT46230.10468275893301933No Hit
TGGGCG46120.10443367601105022No Hit
GGAAGG45980.10411666138308952No Hit
GGTAGG45910.10395815406910919No Hit
GGGCCG45460.10293917847923553No Hit
TGGAGG45440.10289389067524116No Hit
GGGTGA45370.10273538336126081No Hit
GGAGTG45110.10214664190933381No Hit
GGCTGG45070.10205606630134506No Hit
GTGGTT44800.10144468094742086No Hit
CGGCGG44600.10099180290747702No Hit
CGGGGC44330.10038041755355283No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)