FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483675

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483675
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6338110
Sequences flagged as poor quality0
Sequence length6
%GC56

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG233240.3679961376498672No Hit
GGGGTG134600.21236614700596868No Hit
GTGGGG133620.2108199447469356No Hit
GGGGGT131130.2068913288030659No Hit
GGTGGG126910.2002331925447807No Hit
GGGTGG121320.19141352863866357No Hit
GGAGGG119320.1882580138243104No Hit
TGGGGG116120.18320919012134532No Hit
GAGGGG113450.17899657784418382No Hit
GCGGGG108370.17098157021572677No Hit
GGCGGG107540.1696720315677702No Hit
GGGGGA107520.16964047641962668No Hit
CGGGGG106160.1674947263458665No Hit
GGGCGG104360.16465476301294865No Hit
AGGGGG103620.16348722253163797No Hit
GGGGCG98620.15559843549575503No Hit
GGGAGG97890.15444667258851613No Hit
GGGGGC97880.15443089501444437No Hit
GGGGAG86500.1364760157207748No Hit
GGGTTG84130.1327367306657663No Hit
GTGGTG83970.13248428948061805No Hit
GGGGTT83850.13229495859175686No Hit
GGGTGT80880.12760901909244238No Hit
GGTTGG79280.12508460724095985No Hit
GGTGTG78290.12352262740785502No Hit
TTGGGG75780.11956245631584178No Hit
TGTGGG73980.11672249298292393No Hit
GTTGGG73890.11658049481627804No Hit
GGTGGT73290.1156338403719721No Hit
AGGTGG72960.11511318042760381No Hit
TGGTGG72610.11456096533509201No Hit
GGGTAG71440.11271498916869539No Hit
TGGTTG69600.10981191553949049No Hit
TGGGTG69500.10965413979877282No Hit
GTGGGT68710.10840771144710333No Hit
GGCTGG68650.10831304600267273No Hit
CGGTGG68530.10812371511381154No Hit
GGCGGT67760.10690884191028556No Hit
TGGGCG66960.1056466359845443No Hit
GCTGGG66680.10520486391053484No Hit
GTCGGG66610.10509442089203248No Hit
GGCCGG66040.10419509916994184No Hit
TCGGGG65600.10350088591078413No Hit
CTGGGG65320.10305911383677469No Hit
GCGTGG65140.1027751175034829No Hit
GCCGGG64850.10231756785540169No Hit
GTGTGG64090.1011184722259475No Hit
GGGGTA64000.1009764740593016No Hit
GATGGG63920.10085025346672745No Hit
GCGGGT63840.10072403287415332No Hit
GGGTTT63740.10056625713343569No Hit
GGAGGT63660.10044003654086156No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)