FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483677

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483677
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10607410
Sequences flagged as poor quality0
Sequence length6
%GC56

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG457350.4311608583056561No Hit
TGGGGG231920.21863961136601678No Hit
GCGGGG217950.20546957268550947No Hit
CGGGGG214100.20184003446647203No Hit
GGCGGG213970.20171747863050454No Hit
GGGCGG211530.19941719986311454No Hit
GTGGGG210530.19847446266336458No Hit
GGGTGG210050.19802194880748458No Hit
GGTGGG199410.1879912250021447No Hit
AGGGGG197510.18620002432261976No Hit
GGGGGC196600.18534213347084727No Hit
GGGGGA195700.18449366999107228No Hit
GGGGCG191270.18031734419617984No Hit
GGGGGT176890.16676078326377505No Hit
GAGGGG176020.16594060189999255No Hit
GGGGTG165890.15639067406652518No Hit
GGGGAG156150.14720841374096033No Hit
GGAGGG147040.13862007785123795No Hit
TGGTGG132700.12510122640682317No Hit
CGGTGG128900.12151882504777321No Hit
TTGGGG127010.11973705174024574No Hit
GTGTGG121820.1148442456735433No Hit
TGTGGG120370.11347727673390583No Hit
GTTGGG118550.11176149503036084No Hit
GTCGGG117030.11032853448674088No Hit
TGGGGC116240.10958377209893838No Hit
GCCGGG115880.10924438670702838No Hit
CCGGGG115710.1090841213830709No Hit
GCGGTG115690.10906526663907588No Hit
GCGTGG111150.10478523975221096No Hit
ATGGGG110940.10458726494026345No Hit
GGCTGG110310.10399334050442095No Hit
ACGGGG109640.10336170658058848No Hit
GGCGTG109270.10301289381668098No Hit
TAGGGG108240.10204187450093849No Hit
GCAGGG108080.10189103654897849No Hit
CTGGGG108030.101843899688991No Hit
CGGGGC107220.10108028255719351No Hit
AAGGGG106810.100693760305296No Hit
TGGCGG106610.10050521286534603No Hit
AGTGGG106600.10049578549334852No Hit
AGGGTG106170.10009040849745603No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)