FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483679

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483679
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21823271
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG617250.28284027632704556No Hit
GGGGGT405560.18583831910440923No Hit
GGGTGG367090.16821034756888645No Hit
TGGGGG336150.15403282120265105No Hit
GGTGGG320670.14693947575503233No Hit
GTGGGG317920.14567935301724477No Hit
GGGGTG313150.14349361285024598No Hit
CGGGGG308510.14136744212176075No Hit
GGGGGC290650.13318351772289314No Hit
AGGGGG287500.13174010440506373No Hit
GGCGGG278500.12761606635412262No Hit
GGGGAG265950.12186532440531027No Hit
GGGGGA263150.12058229034501748No Hit
GGGGCG261370.11976664726383135No Hit
GGGCGG260450.11934507892973514No Hit
GAGGGG258040.11824075318498312No Hit
GCGGGG257450.11797039957942143No Hit
GGGGTT247160.11325524940784541No Hit
GGGTGT245880.11266871955171157No Hit
GGAGGG242800.1112573820853895No Hit
GTGTGG227370.10418694796027599No Hit
GGGAGG225890.10350877281412121No Hit
TGGGGT221220.10136885529213287No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)