FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483681

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483681
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24429380
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG532630.2180284559002316No Hit
GGGTGG364370.14915237308519494No Hit
GGGGGT360900.14773195226403618No Hit
GTGGGG349580.14309818751028475No Hit
TGGGGG330540.13530429343683711No Hit
GGTGGG318650.13043720307269363No Hit
GGGGTG312990.12812032069581789No Hit
CGGGGG299280.12250822575112426No Hit
AGGGGG289520.11851303635213009No Hit
GTGGGT275620.11282316620397242No Hit
GGCGGG275190.11264714863823805No Hit
GGGGCG274150.11222143173506656No Hit
GGGTGT269920.11048991010005167No Hit
GGGGTT268900.11007238006040267No Hit
GCGGGG261910.10721107125927877No Hit
TGTGGG260630.10668711199383692No Hit
GGGGGC256890.10515616851512401No Hit
GGGTTG254790.10429654784525845No Hit
GGGCGG253140.10362113160464982No Hit
GAGGGG251930.1031258263615368No Hit
GGTTGG249720.10222117794229735No Hit
TTGGGG246350.10084169143875121No Hit
GTTGGG245390.10044872198966981No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)