FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483683

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483683
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30501582
Sequences flagged as poor quality0
Sequence length6
%GC59

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG1993470.6535628217579009No Hit
CGGGGG878780.2881096462472012No Hit
AGGGGG834630.27363498719509044No Hit
GCGGGG831860.2727268375784574No Hit
GGGGGT812270.26630421989259445No Hit
GGCGGG792810.25992422294686224No Hit
GGGGCG773550.253609796370562No Hit
GGGCGG770610.2526459119399118No Hit
GGGGGC764350.2505935593766907No Hit
TGGGGG752680.24676752832033436No Hit
GGGTGG739980.24260380986140326No Hit
GTGGGG726800.23828272251583538No Hit
GGTGGG725560.2378761862253571No Hit
GAGGGG713720.23399442035498355No Hit
GGGGTG680220.22301138347512595No Hit
GGGGAG675400.2214311375718151No Hit
GGAGGG650120.21314304287561214No Hit
GGGAGG649220.21284797621316823No Hit
GGGGGA628320.20599587260752575No Hit
CCGGGG462300.15156590894203453No Hit
GGGCCG441310.14468429867014768No Hit
GGCCGG427480.14015010762392588No Hit
CAGGGG418290.13713714914852612No Hit
ACGGGG400470.13129482923213623No Hit
GCCGGG394400.12930476851987546No Hit
CGCGGG391960.12850481001280523No Hit
CGGTGG391410.12832449149686725No Hit
GCGCGG382130.12528202635522315No Hit
GCAGGG381520.1250820367284556No Hit
GGGTAG377250.1236821093410827No Hit
CGGCGG375490.12310509009008123No Hit
GGGTGT373320.12239365158174419No Hit
GGGTTG372280.12205268566069787No Hit
GGGGCT371000.12163303529633315No Hit
TCGGGG364200.11940364273564566No Hit
AAGGGG361380.11847910052665464No Hit
CTGGGG359380.11782339683233481No Hit
CGGGCG358540.11754800128072046No Hit
GGGGTA357830.11731522646923692No Hit
TTGGGG354270.11614807389334757No Hit
GGGTCG354220.11613168130098957No Hit
CGGGGT351380.11520058205505537No Hit
TGGGCG351020.11508255539007779No Hit
GGGGCA349610.1146202842855823No Hit
TAGGGG348740.11433505317855316No Hit
TGCGGG347790.11402359392375122No Hit
GTCGGG347110.1138006546676825No Hit
TGGTGG346780.11369246355811971No Hit
CGGGGC346200.11350230948676694No Hit
GTAGGG345400.11324002800903901No Hit
ATGGGG345130.11315150801030584No Hit
TGGCGG344510.11294823986506668No Hit
AGCGGG343970.1127711998676003No Hit
TGTGGG343890.11274497171982752No Hit
GGCAGG342920.1124269554280824No Hit
GGCTGG339200.11120734655664746No Hit
GTGTGG337620.11068934063813476No Hit
GGCGCG337480.11064344137953239No Hit
GGGGCC335670.11005002953617292No Hit
GGTCGG334800.10976479842914379No Hit
GGCGTG334340.10961398657945022No Hit
GGGGTT334240.10958120139473422No Hit
AGGTGG332920.10914843695648312No Hit
GCTGGG332500.10901073918067594No Hit
GGGCAG332180.10890582658958477No Hit
GGGGAT331260.10860420289019762No Hit
GCGTGG330920.10849273326216326No Hit
CGTGGG330220.10826323696915131No Hit
GCGGGC330080.10821733771054891No Hit
TGAGGG330030.10820094511819092No Hit
GGCGGT327170.10726328883531352No Hit
GGTGGT324460.10637481032951011No Hit
GGCGGC324370.10634530366326572No Hit
GGGACG324050.10624039107217456No Hit
GCGGGT323450.10604367996387859No Hit
GGTGTG323200.10596171700208862No Hit
CGGGGA319650.10479784294467086No Hit
AGGGGT319610.10478472887078447No Hit
GGGTGC318420.10439458517266416No Hit
TGGGGT317950.104240494804499No Hit
AGAGGG316680.10382412295860588No Hit
GGGCGC315050.10328972444773521No Hit
GTGGGT314300.10304383556236525No Hit
GGTTGG312840.10256517186551177No Hit
GTTGGG312610.10248976594066499No Hit
GAGGGT312540.10246681631136378No Hit
GGGCTG312100.1023225614986134No Hit
AGGGGC308770.10123081484757085No Hit
GTGGGC307450.10079805040931974No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)