FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483687

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483687
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18571452
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG520100.28005349285559367No Hit
GGGTGG383280.2063812781036184No Hit
GGGGGT370500.19949974832339443No Hit
TGGGGG351970.18952206860292886No Hit
GTGGGG329280.17730439170830586No Hit
GGGGTG303000.16315364032925375No Hit
GGTGGG297080.1599659520429528No Hit
AGGGGG287880.15501211213856622No Hit
CGGGGG285290.15361749851330958No Hit
GGGGCG281020.15131827064464318No Hit
GCGGGG277250.14928827320556304No Hit
GGGGGC273650.1473498141125422No Hit
GGGTGT263820.14205674386687697No Hit
GGGCGG257380.13858905593380635No Hit
GGGTTG254000.13676905822980345No Hit
GTGGTG242210.13042060470016023No Hit
GGGGAG236890.12755599292936276No Hit
GGGGTT235210.12665137868595303No Hit
GGCGGG229050.12333445979345072No Hit
TGGTGG227260.12237061485553204No Hit
TGGGGT224030.12063138628040501No Hit
GTGTGG223510.12035138663363532No Hit
GGTTGG223000.12007677159545738No Hit
GGTGGT219330.11810062024229445No Hit
GGAGGG214920.11572600785334393No Hit
GAGGGG213810.11512831629966253No Hit
GGGAGG211320.1137875487603231No Hit
GGGGGA210870.1135452413736955No Hit
GTGGGT208150.11208062783674642No Hit
GTTGGG207510.11173601288687604No Hit
GGTGTG205880.11085832168642494No Hit
TGTGGG202060.10880140120438618No Hit
TTGGGG200430.10792371000393508No Hit
CGGTGG199160.10723986471278607No Hit
AGGTGG195930.10550063613765903No Hit
TGGGTG191840.1032983312236437No Hit
CGGGGT185870.10008371989438412No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)