FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483689

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483689
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12794298
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG430600.3365561752586973No Hit
GGGGGT271080.21187563397382178No Hit
TGGGGG263340.20582606407948292No Hit
GGGTGG256460.20044866861784835No Hit
GGGGTG236580.1849104968478927No Hit
GTGGGG230130.17986918860261034No Hit
AGGGGG226460.1770007232909535No Hit
GGTGGG221220.17290514884052255No Hit
GGCGGG213690.16701971456347195No Hit
CGGGGG192940.15080155237903634No Hit
GGGGGC189660.1482379103566292No Hit
GGGTTG189010.14772987154121311No Hit
GGGGCG184290.144040728143115No Hit
GGGCGG181350.1417428295010793No Hit
GGGTGT168910.13201974817219359No Hit
GGGGAG166460.13010483263716385No Hit
GGGAGG165430.1292997865142738No Hit
GGAGGG160350.12532926777225292No Hit
TGGGGT157820.12335182438301812No Hit
GTTGGG157260.12291412940358276No Hit
GAGGGG156610.12240609058816669No Hit
TGGGTG156110.12201529149938513No Hit
TTGGGG153330.11984244856575953No Hit
GCGGGG152390.11910774627885015No Hit
GGTGGT152290.11902958646109385No Hit
GTGTGG151650.11852936362745342No Hit
TGTGGG150920.11795879695783232No Hit
GGGGGA150640.11773994946811463No Hit
TGGTGG147560.1153326270812201No Hit
GGGGTT143020.11178417135508333No Hit
GTGGGT141700.11075246176069996No Hit
AGGGGT138360.108141923847639No Hit
GGCTGG137970.10783710055838937No Hit
GGTTGG136520.10670378320092279No Hit
GGGTAG135290.1057424174425201No Hit
ATGGGG135250.10571115351541757No Hit
AGGTGG134820.10537506629906541No Hit
GGGCGT133560.10439025259533583No Hit
TAGGGG132060.10321785532899108No Hit
GTGGTG130620.10209235395330013No Hit
AAGGGG128320.10029467814490486No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)