FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483695

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483695
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8190744
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG267830.3269910523390793No Hit
AGGGGG154580.1887252244728928No Hit
GGGGTG152410.1860758924952361No Hit
GGGTGG142950.17452627014102748No Hit
GGGGGT142650.17416000304734222No Hit
GGGGGC134290.16395336003664623No Hit
GGTGGG126230.15411298411963553No Hit
CGGGGG125010.1526234979386488No Hit
GGCGGG123980.15136598091699607No Hit
GCGGGG121270.14805736817070586No Hit
GTGGGG120970.1476911010770206No Hit
GAGGGG116950.14278312202163806No Hit
GGGCGG115430.14092736874696607No Hit
GGGGAG111570.13621473214154906No Hit
GGGGCG108130.13201486946729138No Hit
GGGGGA106760.130342249739462No Hit
GGAGGG103450.12630110280580129No Hit
TGGGGG101160.12350526399067044No Hit
GGGGTT97370.1188780897071133No Hit
GGGTAG90850.11091788487102025No Hit
GGGCGT89970.10984350139621017No Hit
AGGGTG89960.10983129249308732No Hit
GGTTGG88300.10780461457469553No Hit
GTAGGG87550.10688894684048238No Hit
AAGGGG86750.10591223459065502No Hit
GGTGTG84690.10339720054734955No Hit
GGGTGT82850.1011507623727466No Hit
TGGTGG82060.10018625902604207No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)