FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483697

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483697
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9242086
Sequences flagged as poor quality0
Sequence length6
%GC57

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG574460.6215696326565237No Hit
TGGGGG296730.32106388103291833No Hit
GGGGGT292080.31603254936169173No Hit
GGGGTG256710.27776196845603907No Hit
GGGTGG254480.2753490932674723No Hit
GCGGGG246980.26723404218484875No Hit
GGGCGG240790.26053642002465677No Hit
GGCGGG238480.25803698429120875No Hit
GTGGGG224490.24289970900508825No Hit
GAGGGG223250.24155802055942782No Hit
GGTGGG222490.2407356953830553No Hit
AGGGGG220800.23890710387243744No Hit
GGGGCG215500.23317246777405015No Hit
CGGGGG212370.22978578645556857No Hit
GGGGGA199700.21607676015998983No Hit
GGGGGC189490.20502947061951166No Hit
GGAGGG182730.1977151045770403No Hit
GGGAGG174460.18876690824993406No Hit
TTGGGG161750.17501460168191468No Hit
GGGGAG161180.1743978577996353No Hit
GGGTGT147060.15911992162808267No Hit
GTCGGG142730.15443483213638132No Hit
GGCCGG136930.14815919263248578No Hit
TGGGGT135060.14613583989588497No Hit
TGGGAG133610.14456693001991108No Hit
GGCTGG132100.1429330997352762No Hit
GGCGGA130110.14077990618135341No Hit
ATGGGG129640.14027136298017567No Hit
CGGTGG128620.1391677160329389No Hit
GGGCCG126420.13678730104870263No Hit
GGGTAG126110.13645187893728752No Hit
GGGGTT125800.13611645682587242No Hit
TGGTGG124440.13464492756289No Hit
GGGTGA123800.13395244320383948No Hit
GGTTGG123440.13356292075187357No Hit
GTGTGG120830.13073888297512054No Hit
GGTGGT119970.12980835711764638No Hit
GTGGTG119440.12923489350780767No Hit
AGGTGG119160.12893193160072305No Hit
GTGGGT118430.12814206662868102No Hit
GGCGGT118110.12779582444915574No Hit
GGGTTG117660.12730892138419833No Hit
CCGGGG117570.12721154077120683No Hit
CTGGGG116480.1260321533471989No Hit
GGGCGT114840.12425766217713187No Hit
AGGGGC113380.12267793223304782No Hit
AGGGGT113010.12227758971297173No Hit
TGCGGG112460.12168248596691267No Hit
TCGGGG112090.12128214344683658No Hit
GCCGGG111140.12025423697637093No Hit
TGGCGG110340.11938863152755774No Hit
GTGGCG110220.11925879071023576No Hit
CGGGGT109110.11805776315000749No Hit
GGGGTA108720.11763578049371105No Hit
TGGGGA106670.11541766653112728No Hit
GCGGGA106020.11471436210396657No Hit
TAGGGG105830.11450878080987344No Hit
CGTGGG105590.11424909917522948No Hit
GGCGCG105440.11408679815357703No Hit
GGGTGC105290.11392449713192455No Hit
GGGCTG104930.1135349746799586No Hit
TGGGTG104290.11284249032090807No Hit
GTTGGG104230.11277756991224708No Hit
GGAGGT103970.1124962481413828No Hit
GTGGGA103960.11248542807327264No Hit
TGTGGG103140.11159818248823912No Hit
AAGGGG103110.11156572228390862No Hit
GCGTGG102500.11090569812918859No Hit
GGGGTC102270.11065683656265479No Hit
GAGGGT102170.11054863588155314No Hit
GGGTCG102090.11046207533667184No Hit
GGCAGG101680.11001845254415507No Hit
CGGGTG101370.10968303043273997No Hit
GGGCGC100210.10842790253196087No Hit
GGGGAT99760.10794099946700345No Hit
CGGGCG98140.10618814843315677No Hit
CGCGGG98040.10607994775205512No Hit
GACGGG97560.1055605844827672No Hit
TGAGGG95740.10359133208671721No Hit
GCGAGG95400.10322344977097163No Hit
GAGTGG95260.10307196881742932No Hit
GGGGCT94740.10250932527570075No Hit
GGTAGG94190.10191422152964168No Hit
GCAGGG94010.10171946030365872No Hit
TGGGGC93120.10075647424185405No Hit
GGGAGT92810.10042105213043896No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)