FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483701

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483701
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20693554
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG686910.33194394737607663No Hit
GGGGGT417150.20158451274247044No Hit
GTGGGG400390.193485372304825No Hit
TGGGGG393110.18996736858250643No Hit
GGTGGG392710.1897740716746867No Hit
GGGTGG388250.18761881115249704No Hit
GGGGTG381740.18447290397773142No Hit
GGGGCG334960.1618668306082174No Hit
GGGGGC333380.16110330782232962No Hit
GGGTTG317010.15319263186980833No Hit
GGGCGG307380.14853900881404905No Hit
TTGGGG305120.14744688128486774No Hit
GGAGGG298890.1444362819455759No Hit
GGGAGG296370.14321851142631178No Hit
GGGTGT294150.14214571358791245No Hit
CGGGGG291360.14079746765587003No Hit
GGGGTT288510.13942022718765468No Hit
AGGGGG284000.13724080455198756No Hit
GGTTGG280350.13547697026813277No Hit
GGTGGT278100.13438967516164696No Hit
GGGGGA277700.13419637825382724No Hit
GGTGTG267210.1291271668462556No Hit
GTGGGT265500.12830082256532638No Hit
TGGTGG264830.12797705024472839No Hit
GGGGAG260800.1260295838984449No Hit
GCGGGG258490.12491329425578612No Hit
TGTGGG256120.12376801007695441No Hit
GTGTGG255920.12367136162304455No Hit
TGGGGT252540.12203800275196808No Hit
GGGTTT248130.11990690434325589No Hit
GAGGGG247290.11950098083683451No Hit
GGCGGG246110.11893075495876639No Hit
GTTGGG237060.11455741241934567No Hit
GGGTCG236810.11443660185195834No Hit
GGGGCT236400.11423847252144315No Hit
GGGTAG226740.10957035219759736No Hit
TGGGTG224290.10838640863720171No Hit
GGTTTG222630.10758422646974997No Hit
GCGTGG219940.10628430476466247No Hit
GTGGTG219050.10585421914476364No Hit
GGGGTA213060.10295959795016361No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)