FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483703

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483703
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4956916
Sequences flagged as poor quality0
Sequence length6
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCAATT136340.27505005128188575No Hit
GGGGGG134230.27079337233069917No Hit
TGGGGG94710.19106638078999122No Hit
GGGGGT88040.17761043358410752No Hit
GGTGGG87610.17674295872675672No Hit
GGGGGC79840.16106788979276632No Hit
GGGGTG78780.1589294634002271No Hit
AGGGGG75330.15196949070752863No Hit
GGGTGG73670.14862063428147662No Hit
TGGTGG69790.14079318673142738No Hit
TTGGTG69740.14069231756196796No Hit
GTGGGG69410.14002658104353594No Hit
GGTTTT68390.13796884998656422No Hit
GAGGGG67360.13589094509570063No Hit
GGGTTG66880.13492260106889042No Hit
GGTTGT64420.12995983793148805No Hit
TTGTGG63670.12844680038959708No Hit
GGGGTT63360.1278214115389488No Hit
GTGGTG63330.12776089003727317No Hit
GGGTGT63260.12761967320003004No Hit
GCTGGG62910.12691358901381422No Hit
TGTTGG62510.12610663565813904No Hit
GGTGTT62390.1258645496514365No Hit
TTGGGG61840.12475498878738313No Hit
GTGTGG61650.12437168594343741No Hit
TTGGGT61090.12324195124549216No Hit
TGGGTG60620.12229378105257382No Hit
CTGGGT59280.11959048731106196No Hit
GTTGAG58670.11835988344365732No Hit
GCGGGG56940.11486981018036214No Hit
GGCGGG56560.11410320449247072No Hit
GGTGGT55960.11289277445895796No Hit
TGTGTG55350.1116621705915533No Hit
CGGGGG55190.11133938924928323No Hit
TGGGGT54820.11059295739528367No Hit
GGGGCG54700.11035087138858114No Hit
GAGGGT54490.10992722087685164No Hit
GTGAGG54190.10932200586009526No Hit
TGTGGG53500.1079300113215556No Hit
GTTTTT53480.10788966365377181No Hit
TAGGGT53310.10754670847760987No Hit
TGTGGT53200.10732479630479919No Hit
TGGTTA53190.10730462247090732No Hit
GGTTGG52740.10639679994577274No Hit
GTGGTT52510.10593280176625951No Hit
GGGTAG52450.10581175876290823No Hit
GTTGGA52410.10573106342734072No Hit
TTGTGT52050.10500480540723305No Hit
GGGCGG51480.1038548968753959No Hit
GGGGGA51230.10335055102809892No Hit
TTTTTT51230.10335055102809892No Hit
TGTTTT50460.1017971658184242No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)