FastQCFastQC Report
Fri 10 May 2024
EGAF00005483705

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483705
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24464735
Total Bases146.7 Mbp
Sequences flagged as poor quality0
Sequence length6
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG450970.18433471688943287No Hit
TGGGGG354400.14486157319913745No Hit
GGGGTG344040.14062690644309042No Hit
GGTGGG340730.13927393858956574No Hit
GGGGGT330140.13494525896152154No Hit
TGGGGT327780.133980605144507No Hit
GTGGGG323060.13205129751047784No Hit
GTGTGG316570.12939849951368776No Hit
TGGTGG299190.12229439640363977No Hit
GTTGGG296390.1211498918749784No Hit
GGGGTT293040.11978057395675856No Hit
GGGTTG290890.1189017579793936No Hit
GGGTGG282960.1156603576535777No Hit
TGTGGG280800.11477745416003894No Hit
GTGGGT276460.11300347214061382No Hit
GGTTGG272250.11128262783144802No Hit
TTGGGG268540.10976615933097171No Hit
TGGTGT267530.10935332019741885No Hit
GGGTGT264620.1081638529908458No Hit
GTGGTG263950.10788998940720183No Hit
TGGGTG260150.10633673326116141No Hit
GGGTTT259370.10601790699960577No Hit
GTGGTT255970.10462815150051696No Hit
GGTTGT252600.10325065854994955No Hit
TGGTTG252370.10315664567795238No Hit
GGTGGT252070.10303402019273865No Hit
GGTGTG249140.101836377953818No Hit
GTGTTG245120.10019319645195421No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)