FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483707

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483707
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20105472
Sequences flagged as poor quality0
Sequence length6
%GC56

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG1119840.5569826960540891No Hit
GGGGGT538890.2680315090339585No Hit
TGGGGG503350.2503547292995658No Hit
GGGTGG488830.24313281478793433No Hit
CGGGGG484870.2411632017393076No Hit
GGTGGG471620.23457295605892764No Hit
AGGGGG464170.23086749716694044No Hit
GGGGCG462680.23012640538854298No Hit
GTGGGG454660.2261374415880413No Hit
GGGGTG440130.21891055330608505No Hit
GGCGGG435110.21641372060302788No Hit
GCGGGG425700.2117334027273769No Hit
GAGGGG423320.21054964539007093No Hit
GGGCGG405640.2017560194557979No Hit
GGGGGC398580.19824453760647845No Hit
GGGGGA398020.19796600646828882No Hit
GGAGGG381010.1895056231457784No Hit
GGGAGG378920.18846610514789205No Hit
GGGGAG377750.18788417401988872No Hit
TTGGGG282100.14031006086303272No Hit
TGTGGG268420.1335059430586857No Hit
GGGGTA267560.1330781988107516No Hit
GTGGGT263790.13120308739829636No Hit
TGGGGT262780.13070073659549003No Hit
TAGGGG255040.12685103836408318No Hit
GGGGTT251840.12525943186014235No Hit
GGCGGT247920.12330971389281485No Hit
ATGGGG246130.12241940900467295No Hit
GGTGGT243150.12093722544787808No Hit
GAGGGT242640.1206835631613125No Hit
GTTGGG240520.11962912385245171No Hit
GGGTGT238450.11859955339521498No Hit
AGGGTG237710.1182314943911787No Hit
TGGTGG235800.11728150425913901No Hit
GGAGGT235030.11689852394412825No Hit
GGGGAT233090.11593361250111411No Hit
GGTCGG228210.11350641258260437No Hit
TGGGTG227160.1129841666984988No Hit
GGGTTG226090.1124519732737436No Hit
GCCGGG224670.11174569788761984No Hit
GGTGGA224240.1115318257636528No Hit
GTGTGG224200.11151193068235354No Hit
TCGGGG223680.11125329462546316No Hit
AAGGGG223490.11115879298929165No Hit
TGAGGG221830.11033314711537238No Hit
AGGTGG220820.10983079631256606No Hit
TGCGGG219950.10939807829430716No Hit
GTGGTG219310.10907975699351899No Hit
GGGTGC218000.1084281930809682No Hit
GGGATG216200.1075329144225015No Hit
GATGGG215320.10709522263391777No Hit
CGGGGT212250.10556827514419954No Hit
GGTTGG211790.10533948170925805No Hit
GGGTCG211600.10524498007308658No Hit
GGGTGA211590.10524000630276176No Hit
GTAGGG210790.10484210467677656No Hit
AGGGGT209420.10416069814227688No Hit
GGCAGG207310.10311123260374092No Hit
GGTGTG206290.10260390803060977No Hit
AGGGGA206220.10256909163833608No Hit
CGGTGG205900.102409930987942No Hit
GGGTAG205370.10214632116072679No Hit
CTGGGG205300.10211150476845307No Hit
GTCGGG203990.10145994085590232No Hit
GCGGGT203440.10118638348803749No Hit
TGGCGG202280.10060942613035893No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)