FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483709

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483709
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10298472
Sequences flagged as poor quality0
Sequence length6
%GC56

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG427500.41511012507486544No Hit
GGGGGT238010.23111195524928357No Hit
CGGGGG235120.22830571370199387No Hit
GGGTGG227180.22059583208072034No Hit
GCGGGG215640.20939028624829006No Hit
TGGGGG208970.2029135972792857No Hit
GGGGTG207610.2015930130217376No Hit
GGGCGG204690.1987576409393549No Hit
GGCGGG195290.18963007327689002No Hit
GGGGCG189670.18417295303613973No Hit
GGGGGC188920.18344468965881539No Hit
GGGGAG178710.17353059754884026No Hit
GTGGGG173090.16807347730808997No Hit
GGTGGG171680.16670434215872024No Hit
AGGGGG169780.16485940826949863No Hit
GGGAGG169620.16470404541566944No Hit
GGGGGA158910.15430444438747806No Hit
GGGTGT146100.14186570590277858No Hit
TGGTGG144920.14071990485578834No Hit
GCGGGT144850.14065193360723804No Hit
GAGGGG142880.13873902846946615No Hit
TGGGGT126850.12317361255145423No Hit
GGTGGT125490.12185302829390612No Hit
GGGGTT125020.12139664991078288No Hit
GGGTCG123180.1196099770917472No Hit
GGAGGG120600.11710475107375151No Hit
AGGTGG119680.11621141466423368No Hit
GGGCGT118490.11505590343887909No Hit
GGGTTG118190.11476459808794937No Hit
GGCCGG116990.11359937668423044No Hit
TGGCGG115740.1123856043886899No Hit
GATGGG114860.11153110869262936No Hit
GTGGGT114430.1111135710229634No Hit
GTGTGG113940.11063777228311153No Hit
GGCGGT113620.11032704657545314No Hit
GGGCCG112900.10962791373322178No Hit
CGGGGT112460.1092006658851915No Hit
CGGGTG112280.10902588267463367No Hit
GGTGTG111590.10835588036749529No Hit
CGGTGG109920.10673428058065312No Hit
GGTTGG109800.10661775844028124No Hit
CAGGGG109030.10587007470622825No Hit
GGCGTG108740.10558847953366286No Hit
GGGAGT108680.10553021846347692No Hit
TTGGGG107060.10395716956845638No Hit
GGCGCG106790.1036949947526196No Hit
GGCGGC106280.10319977565603908No Hit
GGAGGT106090.10301528226711691No Hit
GCTGGG104370.10134513158845312No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)