FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483711

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483711
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13508137
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG569590.42166436422728015No Hit
GGGGGT316220.23409593787803604No Hit
GGGTGG308210.22816617865217093No Hit
GTGGGG291570.21584767758870083No Hit
GGTGGG263490.195060207044095No Hit
GGGGTG257410.19055921627090397No Hit
GGAGGG247860.1834894034610398No Hit
TGGGGG232050.17178534686167307No Hit
GGGAGG231130.17110427588941393No Hit
GCGGGG228360.16905366002728578No Hit
GGGCGG224030.1658481846904573No Hit
CGGGGG215750.15971854594012483No Hit
AGGGGG215100.15923735449233303No Hit
GAGGGG209300.15494364618896003No Hit
GGCGGG204260.1512125617322359No Hit
GGGGGC200280.14826618948267997No Hit
GGGGAG190990.1413888532519325No Hit
GGTTGG186270.13789466304642897No Hit
GTTGGG186000.13769478352196163No Hit
GGGGCG184010.13622159739718362No Hit
TTGGGG183880.13612535910762527No Hit
GGGTTG180560.13366758125121178No Hit
GGTGGT179540.13291248082544618No Hit
GGGGGA179100.13258675123001787No Hit
GTGGTG175310.12978103494212415No Hit
TGTGGG173520.12845590772435903No Hit
GGGTGT167780.1242066170930899No Hit
TAGGGG163870.12131206546098844No Hit
GGGGTT163630.12113439477257301No Hit
TGGTGG160020.11846193150099084No Hit
GGAGGT158730.11750695155075788No Hit
GGGGTA154400.11430147621392943No Hit
GTGGGT153580.1136944346951767No Hit
GTGTGG152970.11324285502878748No Hit
GGCTGG152760.11308739317642397No Hit
GTAGGG152590.11296154310546302No Hit
GGTGTG152240.1127024400181905No Hit
AGTGGG152000.11252476932977508No Hit
GGCAGG149840.11092573313403618No Hit
TGGGGT147910.10949696468136205No Hit
TGGGTT147660.10931189104759598No Hit
GGGGAT147200.10897135556146641No Hit
GGATGG145530.107735063687909No Hit
GGGTAG144850.10723166340406527No Hit
AGGGGT142940.10581770084209244No Hit
GAGGGT142350.10538092706640449No Hit
GGGAGT139460.10324147586006863No Hit
GGTGTT137820.10202739282256316No Hit
GGCCGG136520.10106500992697956No Hit
GGCGGT135590.10037653600936977No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)