FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483713

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483713
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14049991
Sequences flagged as poor quality0
Sequence length6
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG381270.2713667218719215No Hit
GGGGGT279880.1992029745784179No Hit
GGGTGG273700.19480439524836707No Hit
GTGGGG243490.17330260211554585No Hit
GGGGTG243190.17308907884709676No Hit
TGGGGG229040.16301789801858238No Hit
GGTGGG222210.15815668494022522No Hit
GGGTTG215910.1536726963027948No Hit
GGTGGT205470.1462420865607672No Hit
GGGGCG191810.13651966040405294No Hit
GGGTGT185340.13191467524783468No Hit
CGGGGG178100.12676164703593049No Hit
AGGGGG173810.12370826429710881No Hit
GGGGGC172570.12282570145418599No Hit
GTTGGG172390.12269758749311654No Hit
TGGTGG170250.12117445484484653No Hit
GGGAGG170200.12113886763343834No Hit
TTGGGG168000.11957303033147851No Hit
TGTGGG167590.11928121519793145No Hit
GGAGGG167030.11888263843015984No Hit
TGGGTG166650.1186121756234577No Hit
GGGGAG166230.118313243047629No Hit
GGGTTT165400.11772249533825324No Hit
GGGGTT162610.1157367289416769No Hit
GCGGGG161630.11503921959807661No Hit
GTGGGT161530.11496804517526024No Hit
GGGGGA160560.1142776532739416No Hit
GGTTGG160120.11396448581354962No Hit
GTGGTG158600.11288263458674101No Hit
GTTTGG158240.11262640666460212No Hit
GTTGGT154580.1100214227895235No Hit
GGGTCG154220.10976519486738462No Hit
TGGGGT153200.10903921575465778No Hit
GGGCGG151980.10817088779629823No Hit
GAGGGG151560.10787195522046952No Hit
GGCGGG150250.10693957028157527No Hit
GGTAGG145010.1032100305259982No Hit
GTGTGG142650.10153031414753219No Hit
GTTTTT141530.10073316061198899No Hit
GGTTTG141000.10035593617106232No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)